rs259596126 SNP Detail

Summary

• ID
  rs259596126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60660011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCGTGCA GCCATTCTTG
  GTCGTGGCCC TCCCTTTTGG GAAGTTCTGA CCCTCCTGTT ACCAGAACCT GGACTCTGCC
  CAAACAGCTT GCCCAGTTTC TTGAGGCAGG CCAAGCAAGG ACCAAAGCAA GAAGACTGTA
  ATAGGTTGAC TTGAGTGGCA AATGCATAGA TCGGTCTGTA GTTTAAAAAA AAAAAAAAAA
  R
  AAAAAGCAGC TCAGAGTTCT GGCCACAGAC CCAGACGACG GCCATTGCAA TAGAATTGTT
  CAGCTTAATG ATATTAAAAA AAAAAAAAAA GCACCCAATG AAGTCCCATA CCTTCTGCAG
  CTTTTGATAG AAGTTGTCTA TCTACTATGC TTCTGGGATT AAAAATGAGT AAACCATAAA
  TCCTACTGTT GGGAATCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400860965	MGP_WTSI_18_60686593	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259596126					SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400860965	MGP_WTSI_18_60686593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60660011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	218 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	512 bp upstream
Gm58903	predicted gene, 58903	1483 bp downstream
Rr351670	regulatory region 351670	1780 bp proximal
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	705 bp downstream
Tssr153448	transcription start site region 153448	953 bp upstream
Tssr153449	transcription start site region 153449	860 bp upstream
Tssr153450	transcription start site region 153450	836 bp upstream