rs259604296 SNP Detail

Summary

• ID
  rs259604296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:58884934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGGGTG AACAGAAGAA
  ATGCAAAGCC CTAGAAGTGT CCAACCGTGT GACATTGTGA AAAGATGCTG TCATGTATAG
  ATGTGTAGGG CCCAATTCAG TTTTTGGGTG GAGGCACACT GCTTCCAGTT AGCAGATTAA
  ACATGCCCAT AAAGGCTGGG GAAAAGAGGT CATTTTAATA CATCTTGAAA TGCGTGTTTG
  R
  TCCTACACTT CCTTAGGGAC CCACAGATGC TTCTACAGTC ATTTGTCACC AAACACTTCA
  CAGTTAACCA TCTGTTGTTT GAATCTGCTT GTAATTTGTA TGTGAGAGCT TTGGAAAAGA
  CCATAAACAT CAAAGTCTTG TTTTCTAATA ATGAAGTGAT CTTTTATTTT TTTCCCCATA
  TAAGCCAGAA TTAGAGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368457290	MGP_WTSI_6_58857943	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259604296					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368457290	MGP_WTSI_6_58857943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:58884934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17490	CpG island 17490	652 bp distal
Herc3	hect domain and RLD 3	within coordinates
Nap1l5	nucleosome assembly protein 1-like 5	873 bp upstream
Rr146376	regulatory region 146376	133 bp distal
Tssr56753	transcription start site region 56753	1370 bp downstream
Tssr56754	transcription start site region 56754	1226 bp upstream
Tssr61172	transcription start site region 61172	1688 bp upstream
Tssr61173	transcription start site region 61173	907 bp upstream
Tssr61174	transcription start site region 61174	851 bp upstream
Tssr61175	transcription start site region 61175	830 bp upstream
Tssr61176	transcription start site region 61176	818 bp upstream