rs259623777 SNP Detail

Summary

• ID
  rs259623777
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8061332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAAACA ATGCTTTACA
  TTTTCTTACC ACCTCCTATA ATGAAGCAAA AATTAAGGTT GATAAGTACA AAACTGAAAA
  TTCCCTTAAT CAGCCCTCTG GGACCTTTCA AAATCATGGC TACACTATCC CAGTTGTCAA
  CATTGAAGTA TCTCCATTTG CTGTAGAGAC ACTGGCTTCC AGCCATGTGA TCCCCACAGC
  M
  ATAAGCACCC CAAGTGTCAC AATCCCTGGT CCTAACATCA TGGTGCCTTC ATACAAGTTA
  GTGCTGCCAC CCCTGGAGTT GCCAGTTTTC CATGGTCCTG GGAATCTATT CAAGTTTTTC
  CTCCCAGATT TCAAGGGATT CAACACTATT GACAATATTT ATATTCCAGC CATGGGCAAC
  TTTACCTATG ACTTTTCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064714	MGP_WTSI_12_8018138	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	A	A	A	A	A	C	C	A	A	A	A	A	A	A	C	C	A	C	A	A	A	A	C	A	C	A	A	A	C	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259623777					SNP	A	A	A	A	C	A	A	A	A	A	C	C	A	A	A	A	A	A	A	C	C	A	C	A	A	A	A	C	A	C	A	A	A	C	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064714	MGP_WTSI_12_8018138	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8061332 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112656	transcription start site region 112656	1997 bp downstream
Tssr112657	transcription start site region 112657	1983 bp downstream
Tssr112658	transcription start site region 112658	1950 bp downstream
Tssr112659	transcription start site region 112659	1871 bp downstream
Tssr112660	transcription start site region 112660	1747 bp downstream
Tssr112661	transcription start site region 112661	1512 bp downstream
Tssr112662	transcription start site region 112662	1271 bp downstream
Tssr112663	transcription start site region 112663	1030 bp downstream
Tssr112664	transcription start site region 112664	1006 bp downstream
Tssr112665	transcription start site region 112665	851 bp downstream
Tssr112666	transcription start site region 112666	831 bp downstream
Tssr112667	transcription start site region 112667	782 bp downstream
Tssr112668	transcription start site region 112668	646 bp downstream
Tssr112669	transcription start site region 112669	559 bp downstream
Tssr112670	transcription start site region 112670	503 bp downstream
Tssr112671	transcription start site region 112671	400 bp downstream
Tssr112672	transcription start site region 112672	170 bp upstream
Tssr112673	transcription start site region 112673	213 bp upstream
Tssr112674	transcription start site region 112674	314 bp upstream
Tssr112675	transcription start site region 112675	341 bp upstream
Tssr112676	transcription start site region 112676	444 bp upstream
Tssr112677	transcription start site region 112677	594 bp upstream
Tssr112678	transcription start site region 112678	718 bp upstream
Tssr112679	transcription start site region 112679	743 bp upstream
Tssr112680	transcription start site region 112680	762 bp upstream
Tssr112681	transcription start site region 112681	809 bp upstream
Tssr112682	transcription start site region 112682	822 bp upstream
Tssr112683	transcription start site region 112683	859 bp upstream
Tssr112684	transcription start site region 112684	903 bp upstream
Tssr112685	transcription start site region 112685	951 bp upstream
Tssr112686	transcription start site region 112686	999 bp upstream
Tssr112687	transcription start site region 112687	1079 bp upstream
Tssr112688	transcription start site region 112688	1180 bp upstream
Tssr112689	transcription start site region 112689	1222 bp upstream
Tssr112690	transcription start site region 112690	1247 bp upstream
Tssr112691	transcription start site region 112691	1298 bp upstream
Tssr112692	transcription start site region 112692	1334 bp upstream
Tssr112693	transcription start site region 112693	1353 bp upstream
Tssr112694	transcription start site region 112694	1491 bp upstream
Tssr112695	transcription start site region 112695	1710 bp upstream