rs259624945 SNP Detail

Summary

• ID
  rs259624945
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174138610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTGAGC TAGGTGGGGG
  GTCTTCCGGT AAGCCTTAAG CCCCCTCCCC TATTTGCACG AAAGCGGCAA ACATGAATAA
  CTCCTAAGGG GGCTTTGCTT GATTTTCTGC AGTGCACTGC TGAGACCTTT ATTTCTACTG
  CATCACCGTC CATATAAACA GAGCAAGCCC TGACTACAAC ACACTATACC ACTGTTGAGA
  S
  CTCCGAGGTG TAATGGGGAT GGGGGACATT GAAGGGATTT GCTGGAGCCA TCCCCAACAA
  ACAGCAAACA TAAACATTAA AAAAAGAAAA AAAAAGGAAA AAAAAGAAAT AAAGAAAAGT
  ACCCTAGAGC ATTTACGAAA CAAATTGCGT GTTTACATTC GGCACTTCCT CACCCTGTCT
  CTACCCTTCC GGTGGGCTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356686897	MGP_WTSI_2_174122318	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259624945					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356686897	MGP_WTSI_2_174122318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174138610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12856	CpG island 12856	272 bp distal
Cpgi12857	CpG island 12857	122 bp proximal
Cpgi12858	CpG island 12858	1417 bp proximal
Gm56458	predicted gene, 56458	1625 bp downstream
Gm56459	predicted gene, 56459	1356 bp downstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	1381 bp upstream
Rr374311	regulatory region 374311	527 bp downstream
Rr572094	regulatory region 572094	1422 bp distal
Rr572095	regulatory region 572095	900 bp distal
Rr572096	regulatory region 572096	1347 bp distal
Rr572097	regulatory region 572097	178 bp proximal
Rr572098	regulatory region 572098	655 bp proximal
Tssr22103	transcription start site region 22103	1186 bp downstream
Tssr22104	transcription start site region 22104	510 bp upstream
Tssr22105	transcription start site region 22105	1912 bp upstream
Tssr28009	transcription start site region 28009	1375 bp upstream