rs259633578 SNP Detail

Summary

• ID
  rs259633578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGAACT AGAGGCAAGG
  GGCAAGACAA AATGTTTAAA CTTTAAATTT TTCCTATCAA AAAAAATCAC TTTTTCATCC
  TGACTGCCCA GTGTAAACCC CGAGGCACCT GTGTTATGCC CACTGTGGGA AATCTCCTGT
  TGTCAAAGAA CTCAAGGCAC ACTACGGTAG CAGCAATGAT AATGGTTGCT GCTGTCCCGG
  Y
  AGTTTGCCCT GGGTATGTCA GCCCAATTTG AGTGAACTTA GAGGAGTCAG CAGACACAAA
  CTGTCTTCCT AAGAGAGACT GCCCACATCA CCAAAGGGTC CTTAGCTAGA TAGAGCAAGG
  TATATAAAAG CCTTACTGGT CTAGCACAAA GGAGGAAGAA CTAGCTCCTA ATATCCTTCA
  TGTTGTCACT GAATGTAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	AKR/J	C57BL/6J	DBA/1J	FVB/NJ	SJL/J	SPRET/EiJ	ST/bJ
ss350399195	MGP_WTSI_1_90160041	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	AKR/J	C57BL/6J	DBA/1J	FVB/NJ	SJL/J	SPRET/EiJ	ST/bJ
rs259633578					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399195	MGP_WTSI_1_90160041	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191188 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1177 bp downstream
Tssr12870	transcription start site region 12870	1352 bp downstream