rs259633659 SNP Detail

Summary

• ID
  rs259633659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7835059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCAGCAGG GACAAAGATA TACAGAAAGA
  AATAGAAGTG AGAAGGCAAA GACGGAGAAG TGGAAGGAGG CAGAGGGATG GTGCCTggga
  gggagggagg gagggaggga gggagggagg gagggagggg ttgaagggag agggagggag
  R
  gagagagaga gagagagaga gagagagaga gagagaTTCA GACAGAGCCT GAGATGTTAT
  GAACACGGAG AGGTAAAAGA GATGGACAGA AGATGAAGGA AGCTAGAAAT GACAAAGGCC
  TAGGGCACAG ATGGAAACAT AAAAGGAAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888457	CHEV_X_7545946	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259633659					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7835059 () rs orientation: forward

Symbol	Name	Function Class
Gata1	GATA binding protein 1	Intron
Gm14820	predicted gene 14820	within coordinates
Gm39488	predicted gene, 39488	within coordinates
Gm52419	predicted gene, 52419	within coordinates
Rr689704	regulatory region 689704	921 bp distal
Rr689705	regulatory region 689705	420 bp distal
Rr689706	regulatory region 689706	815 bp distal
Tssr162833	transcription start site region 162833	1008 bp upstream
Tssr162834	transcription start site region 162834	945 bp upstream