rs259633796 SNP Detail

Summary

• ID
  rs259633796
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123152742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGGAAT TTTGTCCCTC
  TTGTGTTTCG AGGCAAGGGC TCACTCCTCC TTCAAACTCA TTGTTTTCCA GTCTCCTCTA
  TGCTGGGACT CCAGGCACGC ATAACATCTT CGGGATCGAC TTTGTCCGTC TCAATCACAA
  GCCTACACCC TGCCCTCGGT GCCTGGGACC GTGTTGGCAC CCAATAGACG CTCAATAACC
  K
  CTCACTGAAC TCTAGTAGCC CTCCGCTTGC TCTTTTTTCC AACAGACCTT TTGCCACCTT
  GTTCCAAGGA GGAAATAGGC CTCAGGAGGC GCCCAGAGGT GACCTCGGAT GGCCTAAGTC
  AAGAGCTCCG GGAGCAAAGC CACAGGAGCA GCTGCAAAGA GAAGCGAGGC CTGACAGCGT
  GGGGCGCTTC CAGGAAGGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530685	MGP_WTSI_5_123464688	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259633796					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530685	MGP_WTSI_5_123464688	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123152742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16567	CpG island 16567	within coordinates
Gm2479	predicted gene 2479	within coordinates
Gm44574	predicted gene 44574	1805 bp upstream
Orai1	ORAI calcium release-activated calcium modulator 1	395 bp upstream
Rr399336	regulatory region 399336	104 bp upstream
Rr620045	regulatory region 620045	408 bp distal
Rr620046	regulatory region 620046	903 bp distal
Rr620047	regulatory region 620047	within coordinates
Rr620048	regulatory region 620048	717 bp proximal
Tssr48743	transcription start site region 48743	331 bp upstream
Tssr48744	transcription start site region 48744	465 bp upstream
Tssr48745	transcription start site region 48745	601 bp upstream
Tssr48746	transcription start site region 48746	633 bp upstream
Tssr48747	transcription start site region 48747	1550 bp upstream
Tssr53182	transcription start site region 53182	1799 bp upstream
Tssr53183	transcription start site region 53183	161 bp downstream
Tssr53184	transcription start site region 53184	1216 bp downstream
Tssr53185	transcription start site region 53185	1267 bp downstream
Tssr53186	transcription start site region 53186	1290 bp downstream