rs259638372 SNP Detail

Summary

• ID
  rs259638372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCCACT TGAACTACAT
  GTCCTCTGGA GGTGCTCCTG ACTCCTAATT CTTACTCTTT GCTGGATTTC CAGTAACTAA
  CATCTATTTT GTACCTCTTA TCCTCATCCT TGAATCATGT TGGTGTTAAT GAAACACTTT
  ACGCCTCTGC CAGCCTATCT TATGTGCAAA GGTGTGTGTG GTGGGGGCCT GGGGGGCAAG
  Y
  ATCCAAACTG ACAGGCCGGA AAGTGTGGGA GGCGATCTGA TAAATAATGA AGCTGCCTGT
  TTCCTGGGAA CGATTAAGAG TGGCAGAGAG CCATGATCTC TTTGGTGATA GGGAGTCCGG
  CTTGGGATGC AGCTGGGTTC AGTGGGTCAT TTTCTAAATA AAACAAAAAA TTAGGATCGT
  GGCTTCCTAA GAACAGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320509809	CHEV_2_132640234	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259638372					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	1128 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1643 bp upstream
Rr397334	regulatory region 397334	1440 bp upstream
Rr565537	regulatory region 565537	1546 bp proximal
Rr565538	regulatory region 565538	1654 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1639 bp upstream
Tssr20336	transcription start site region 20336	1650 bp upstream
Tssr20337	transcription start site region 20337	1671 bp upstream
Tssr26490	transcription start site region 26490	1480 bp downstream