rs259639077 SNP Detail

Summary

• ID
  rs259639077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10108670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAAACT TGAGTTTGGG
  GAATTATGTT TATGTGAGTG TAGGTGCTTC AAACGAAATA AATTGTTTGG AATACTAAAT
  ATCTCTAGAG AAACAGAGGT GTAAGTATCT CCGGATTATT GGTTTTGGAG GGGGAAGATC
  GCGTGACTCT TTTAAGATAA TTTGCGGTGT GTTAAGCCTC CGGGGTTTGT GGTTGGCGTT
  Y
  CGCTTTTGTG TTTTCGCTAC TGTTGCGAGG TGGCAAGCAA AAGTTACCGG TTGCTAAGAT
  TAACTTTTTT AGGGACTTTA TAGGGTAACA TTTTATACAA GTGTTAGGAG CGGTGAATGC
  CTTAGGCGCT ACTTTTTAAA AAAGGTTTGT CTCAGTGCAG ATTTAATCTC CGCAACCTGT
  GCCTTCCAGC AGTTAATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348594605	MGP_WTSI_1_10028526	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259639077					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348594605	MGP_WTSI_1_10028526	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10108670 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	286 bp upstream
Cpgi31	CpG island 31	2 bp distal
Cpgi32	CpG island 32	1076 bp proximal
Cspp1	centrosome and spindle pole associated protein 1	within coordinates
Rr395966	regulatory region 395966	1553 bp upstream
Rr407692	regulatory region 407692	529 bp distal
Rr407693	regulatory region 407693	173 bp distal
Rr407694	regulatory region 407694	within coordinates
Rr407695	regulatory region 407695	838 bp proximal
Rr407696	regulatory region 407696	1231 bp proximal
Rr407697	regulatory region 407697	1351 bp proximal
Tssr4	transcription start site region 4	217 bp downstream
Tssr5924	transcription start site region 5924	1317 bp upstream
Tssr5925	transcription start site region 5925	1352 bp upstream
Tssr5926	transcription start site region 5926	1379 bp upstream
Tssr10955	transcription start site region 10955	551 bp upstream
Tssr10956	transcription start site region 10956	514 bp upstream
Tssr10957	transcription start site region 10957	477 bp upstream
Tssr10958	transcription start site region 10958	276 bp upstream
Tssr10959	transcription start site region 10959	1562 bp downstream