rs259653331 SNP Detail

Summary

• ID
  rs259653331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15227009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCATAAAT GATGTTGTGA
  TGATGGGCAA AAATGTTCAA CTGCTCTGAA TGGGCTGAAT GAAAGTAGCC TTTCTGAACA
  TCTATATTGG ATAGGTCCAC GTATGCAGAC TTGGTGACTC ATAGGTGAGC AAGATAGTCT
  AGCTTCACAT AGCCCATCTG GGTATGAAGT TACAGTACTG TAGTTATTAG GGTATCATGT
  R
  CGACATTCAT TTCCCCCTAG TTTTATTTAG CACTCAAAAT CAACCTCTAT AATTCTTTGA
  AACAAATTTC CTCCCTTGTT AATAACTTAG AAGTAGCCAG GCAGAGGCAG GCGGATTTCT
  GAGTTCGAGG CCAGCCTGGT CTACAGAGTG AGTTCCAGGA CAGCCAGAAC TATACAGAGA
  AACGCTGTCT CATTAAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376730006	MGP_WTSI_9_15120157	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259653331					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376730006	MGP_WTSI_9_15120157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15227009 () rs orientation: forward

Symbol	Name	Function Class
Cep295	centrosomal protein 295	1202 bp downstream
Gm22579	predicted gene, 22579	963 bp upstream
Gm22620	predicted gene, 22620	392 bp downstream
Gm23455	predicted gene, 23455	776 bp upstream
Gm24299	predicted gene, 24299	1569 bp downstream
Gm24357	predicted gene, 24357	118 bp downstream
Gm24455	predicted gene, 24455	1781 bp downstream
Gm25791	predicted gene, 25791	732 bp downstream
Gm56154	predicted gene, 56154	805 bp downstream
Rr208215	regulatory region 208215	193 bp proximal
Taf1d	TATA-box binding protein associated factor, RNA polymerase I, D	within coordinates
Tssr83864	transcription start site region 83864	1889 bp downstream
Tssr83865	transcription start site region 83865	177 bp downstream