rs259654131 SNP Detail

Summary

• ID
  rs259654131
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43115034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGGGCC AGGCCATGGC
  GGCGCTTACG CCTGCATCGC CGCGAACCCT CGCACTGGCC ACCGCCGGCG TTCAGTGTTC
  AACCTCACTG TGGCGGGTAA GAGCAGTAGG GGCCGTCCAG CAGCAGAAGA GGGGAAGCAC
  ATGGAGTCCT GGGTGTCAGC AAAGAGAAGA GACAGCGAGG GGGCGTGCCC TTCAGGGAGG
  R
  AGGCGCCAAT AAGGAGGAGC TAGGGCAGCT ACCGGTGGGC GTGGCTGTTG GAGAAGATGC
  CAAGCTAGCT GTGAAGATTA GGGAAATAGC TGCTGATGGA CGTGGCTGCC AGGAAAGGGA
  GGAGCTAGCA AGCAGTTTGT GAGAAAACCT CAAGTAAGCA AGGCCACCAG GGAAAGAGTG
  AAGCTAGCAA GGAAGGTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371132478	MGP_WTSI_7_50720980	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259654131					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371132478	MGP_WTSI_7_50720980	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43115034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	within coordinates
Cpgi18933	CpG island 18933	552 bp proximal
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	120 bp upstream
Rr645966	regulatory region 645966	746 bp distal
Rr645967	regulatory region 645967	81 bp distal
Rr645968	regulatory region 645968	within coordinates
Rr645969	regulatory region 645969	11 bp distal
Rr645970	regulatory region 645970	660 bp proximal
Rr645971	regulatory region 645971	967 bp proximal
Tssr66010	transcription start site region 66010	398 bp upstream
Tssr72134	transcription start site region 72134	1358 bp upstream
Tssr72135	transcription start site region 72135	20 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates