rs259670847 SNP Detail

Summary

• ID
  rs259670847
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86414929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAAGGG CCACTGTAAC
  GGAGAAAAGT AAAATTTGGC TAGAGCAAAG CAATTGTGCC TACAGCGCAC CACCAGTAGG
  TGTCCAAGCT ATGGGAACAC ACCGGCCTCA CCTAAGGCAC CATAGCTTTC CGAGTGTTTC
  TGAAGTGCGG TGGTGGCACA TGTCTTTAAT CCCAACACAT TGGAGGGAAG AGGCCCGCGG
  W
  TCTATGTTCG AGACCAGCCT GATCTACAGA AAGAGTTCCA GGAAACACAA TATTGGTGCC
  GGGGATTTAC GATTCTGAAG AACAAATATA CATAAAGTCT ATTTCGGCTC TTTCCAAGGG
  GGGAGTCGTT CAATAATGTG TAAGAGCGAA GCGAGAGAAA ACCATACAAG CTCAGGCGAG
  CTCTGCTTCC GATTCCAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369085234	MGP_WTSI_6_86387941	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259670847					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369085234	MGP_WTSI_6_86387941	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86414929 () rs orientation: forward

Symbol	Name	Function Class
C87436	expressed sequence C87436	427 bp upstream
Cpgi17664	CpG island 17664	143 bp proximal
Gm44790	predicted gene 44790	within coordinates
Gm66311	predicted gene, 66311	within coordinates
Rr368111	regulatory region 368111	567 bp upstream
Rr399735	regulatory region 399735	240 bp upstream
Tssr57468	transcription start site region 57468	413 bp upstream
Tssr57469	transcription start site region 57469	468 bp upstream
Tssr57470	transcription start site region 57470	719 bp upstream
Tssr57471	transcription start site region 57471	767 bp upstream
Tssr57472	transcription start site region 57472	801 bp upstream
Tssr61792	transcription start site region 61792	671 bp downstream