rs259671226 SNP Detail

Summary

• ID
  rs259671226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48047467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG CTTTACCTAG GTAACCGGCC
  R
  ATGGGGGTGG GGGGCGGCCG ATGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321109587	CHEV_4_48060339	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259671226					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48047467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14278	CpG island 14278	739 bp distal
Cpgi14279	CpG island 14279	within coordinates
Cpgi14280	CpG island 14280	1402 bp proximal
Gm68858	predicted gene, 68858	269 bp upstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591928	regulatory region 591928	280 bp distal
Rr591929	regulatory region 591929	1921 bp distal
Rr591930	regulatory region 591930	within coordinates
Rr591931	regulatory region 591931	558 bp proximal
Rr591932	regulatory region 591932	1222 bp proximal
Tssr37194	transcription start site region 37194	1492 bp downstream
Tssr37195	transcription start site region 37195	209 bp downstream
Tssr37196	transcription start site region 37196	188 bp downstream
Tssr37197	transcription start site region 37197	157 bp downstream
Tssr37198	transcription start site region 37198	140 bp downstream
Tssr37199	transcription start site region 37199	90 bp downstream
Tssr37200	transcription start site region 37200	78 bp downstream
Tssr37201	transcription start site region 37201	271 bp upstream
Tssr37202	transcription start site region 37202	397 bp upstream
Tssr37203	transcription start site region 37203	434 bp upstream
Tssr37204	transcription start site region 37204	600 bp upstream
Tssr37205	transcription start site region 37205	645 bp upstream
Tssr37206	transcription start site region 37206	808 bp upstream
Tssr37207	transcription start site region 37207	1559 bp upstream
Tssr37208	transcription start site region 37208	1613 bp upstream
Tssr41633	transcription start site region 41633	506 bp upstream
Tssr41634	transcription start site region 41634	317 bp upstream
Tssr41635	transcription start site region 41635	1581 bp downstream
Tssr41636	transcription start site region 41636	1630 bp downstream