rs259671336 SNP Detail

Summary

• ID
  rs259671336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103286690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATCAGT GTGACTGGGC
  AAAGAACTTC ATTATTGTGT ATTTCCAACT CCTCATGCCT AACGAGGTAT GTACCTAGTG
  TGCATTGCTT TGTAGAAAGG AAACTTAATT ACATCAAGCA GGTTTCTTCT CATGGAGGAA
  AAGTCTTTAC CAGAAGGTCT CAAAAGAAGC GAGTGCATAC AAAGGGGGTG CGAGGAGGTT
  Y
  TAACCTTCTT CTCTTTGAAG TCTGTCACAG AGAGCTTTGC TGGTATGATT CACGGCTTGA
  AAGTGAACCA CCTGACAGAT GGTATCATTC GGAGGAGCAA GAGGATGATC CTGGATTCTC
  TGGGCGTTGG CTTCCTGGGG ACAGGCACAG AAGTGTTCCA TAAAGTCACC CAATATAGTA
  AAGTAAGAAG TGCAAAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392295941	MGP_WTSI_14_103448471	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259671336					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392295941	MGP_WTSI_14_103448471	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103286690 () rs orientation: forward

Symbol	Name	Function Class
Acod1	aconitate decarboxylase 1	within coordinates
Gm41235	predicted gene, 41235	514 bp upstream
Rr496962	regulatory region 496962	107 bp distal
Tssr4512	transcription start site region 4512	159 bp downstream
Tssr126972	transcription start site region 126972	349 bp downstream
Tssr126973	transcription start site region 126973	222 bp downstream
Tssr126974	transcription start site region 126974	1 bp upstream
Tssr126975	transcription start site region 126975	11 bp upstream
Tssr126976	transcription start site region 126976	28 bp upstream
Tssr126977	transcription start site region 126977	50 bp upstream
Tssr126978	transcription start site region 126978	91 bp upstream
Tssr126979	transcription start site region 126979	117 bp upstream
Tssr126980	transcription start site region 126980	137 bp upstream
Tssr126981	transcription start site region 126981	348 bp upstream
Tssr126982	transcription start site region 126982	383 bp upstream
Tssr126983	transcription start site region 126983	443 bp upstream
Tssr126984	transcription start site region 126984	611 bp upstream
Tssr126985	transcription start site region 126985	1047 bp upstream
Tssr126986	transcription start site region 126986	1780 bp upstream
Tssr126987	transcription start site region 126987	1819 bp upstream
Tssr130074	transcription start site region 130074	872 bp upstream
Tssr130075	transcription start site region 130075	833 bp upstream
Tssr130076	transcription start site region 130076	818 bp upstream
Tssr130077	transcription start site region 130077	547 bp upstream
Tssr130078	transcription start site region 130078	520 bp upstream
Tssr130079	transcription start site region 130079	499 bp upstream