rs259671960 SNP Detail

Summary

• ID
  rs259671960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41497018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAATCACT GTGTGTTGGG
  AACTCATGGC CTAGCTGCTG CCATCAAGGA GGTACACTTT GTCTTCTTCC TTTCTTCCTT
  CCTTCCTTAG TTTTTGGAAG GGTTTCTCTG CTGTCCTGGA ACTCACTCTA TAGACCAGGC
  TGGCCTTGAT CTCGAAGATC CACCTGCCTC TGCCTCCTGA GTGCTGGGAT TAAAGGCGTG
  Y
  GCCACCACCT CTGGGCTAAA CGTATACTTT CTAAATATGG TAGAAAACTA TTTGGGAACT
  TTAAAGAGGA TCGGTTCCTC ATTTCAGAGG ACAAAGATGG CTACAAAGAC CAGGGGAGGA
  GAGGTTTCCC TCTACTTTTA AAACCAGACC CTGTGTAGCA GGAAGAACAG ACCTTTGACC
  TCTCCTTTTT TCTGGCTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321092839	CHEV_4_41444051	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259671960					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41497018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14157	CpG island 14157	371 bp proximal
Myorg	myogenesis regulating glycosidase (putative)	within coordinates
Tssr41339	transcription start site region 41339	685 bp upstream
Tssr41340	transcription start site region 41340	1203 bp downstream