rs259673068 SNP Detail

Summary

• ID
  rs259673068
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42150911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGCCCT CTCTGGACGG
  CCGCAAACCG ACCGCTTCGA TACGCGCTTG GCGCTGCGAA GGCCTGGCAG GTCCGACCAC
  CAGCCCCTGA TAGGCACGCA CCTTCCAGCC CGCAGAGCTG TTGCTGTCGC CCTTATCCTT
  GAAGTAGGGC ACACAGCGCA CCATCCACTC GTAGATCTGG GACAAAGTGA GCCGTTTGTC
  M
  GGGGAGCTCT CGATGGCGCG GGTGATCAGG TCGGCATAGG ACAGGTTCCC CCAGGCATTC
  CGCCGCGAGG AGCATTTCCT TGGTTGCCCA GAGCCCCCAG CCGCCCCCGG CTGCGGCTGT
  GGCAGTGGCT GCTGAGGCTG CAGCTGCGTC GGCGTGCCCC CACTCAGAGC GCCTGCGGCG
  GACGCTGGCC CCGACCCGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380164365	MGP_WTSI_10_41994721	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259673068					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380164365	MGP_WTSI_10_41994721	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42150911 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1479	CpG island 1479	within coordinates
Foxo3	forkhead box O3	within coordinates
Gm38485	predicted gene, 38485	713 bp upstream
Gm56983	predicted gene, 56983	1970 bp downstream
Gm66047	predicted gene, 66047	1953 bp upstream
Rr430523	regulatory region 430523	764 bp distal
Rr430524	regulatory region 430524	1771 bp proximal
Rr430525	regulatory region 430525	1964 bp proximal
Tssr93078	transcription start site region 93078	817 bp downstream
Tssr93079	transcription start site region 93079	1977 bp upstream
Tssr97432	transcription start site region 97432	972 bp upstream
Tssr97433	transcription start site region 97433	709 bp downstream
Tssr97434	transcription start site region 97434	1730 bp downstream
Tssr97435	transcription start site region 97435	1750 bp downstream
Tssr97436	transcription start site region 97436	1773 bp downstream
Tssr97437	transcription start site region 97437	1829 bp downstream