rs259674997 SNP Detail

Summary

• ID
  rs259674997
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40518446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAACCCCT TCAACTCCCA
  CCCACGCCGC GATCCCCTTG CACTCCACGC GACCGAGGCC GGGCTGTGAG TTTGCATCCG
  GACTGGCTTT GGATGCAGCC AATCCTCCTT TCGCTGATGG CATAGTCTCC CCTCCCCACA
  GCCCGGGCGC GCCCCTCCCT CGCGCGCCTC GCCACCTCCC GCAGCAGTGC GAGCGCGGCG
  S
  GGCCCGGAGC GGCAGCGGCG GCGCCTGAGT CTCTGCCCGG CAGCCGGGGA CACGGAGAGC
  GAGCGCGCGC CTCCTCCCGC ACCCTCCGCC CCTCGCAGCC CGGGTCCCCC TGCGCTCTCT
  CCTCCCCTCC CTCCTTCTCT TCCTTCTCTT ACCCCTCCAC CCCCTTCTTC CCCTTTTCTC
  TCTGCCTGGC CGATCGCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393745587	MGP_WTSI_15_40486596	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259674997					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393745587	MGP_WTSI_15_40486596	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40518446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	within coordinates
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	5 bp distal
Rr501589	regulatory region 501589	within coordinates
Rr501590	regulatory region 501590	559 bp proximal
Tssr4586	transcription start site region 4586	245 bp upstream
Tssr131170	transcription start site region 131170	159 bp downstream
Tssr131171	transcription start site region 131171	129 bp downstream
Tssr131172	transcription start site region 131172	46 bp downstream
Tssr131173	transcription start site region 131173	within coordinates
Tssr131174	transcription start site region 131174	19 bp upstream
Tssr131175	transcription start site region 131175	158 bp upstream
Tssr131176	transcription start site region 131176	209 bp upstream
Tssr131177	transcription start site region 131177	258 bp upstream
Tssr131178	transcription start site region 131178	287 bp upstream
Zfpm2	zinc finger protein, multitype 2	within coordinates