rs259675193 SNP Detail

Summary

• ID
  rs259675193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4558720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGTCTC AAACTCACAG
  CAGTCCTCCT GCCTACCCTC TCAGGTGCTG GGATTGTTGT CACAAGTCAT TTACACCTGG
  CCTGAGGTGG TTTTATGAAA AATGTCCTAA CCCTAGAGTG AACATTCTGC ATGGTAGCCA
  CAAACAATAC AGGAACATAG GTTTATCTCT GTTTTTGTTT GCTTATTGCA CATTTGTTTG
  Y
  TTATTGTATG TTGTGATGTT TGTATGTACG TGTTGCAAGT GGTAAGTGGA TATCCACTGC
  CCCCTCCTCT ACAAATGTCC ACAGTGTTTA TTTTGTTTTG TTTTGAGATG GGGTCCCTAA
  TTGAACCTGG AGCTGGCAGT CTCAGCGAGG CTGGTTGGCC GGCAAGCTCC CATGCCCACT
  TGGATCTCCC ATCTCTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873957	CHEV_12_4515528	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259675193					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4558720 () rs orientation: forward

Symbol	Name	Function Class
2900045O20Rik	RIKEN cDNA 2900045O20 gene	within coordinates
Rr265385	regulatory region 265385	880 bp proximal
Rr267453	regulatory region 267453	721 bp distal
Tssr112556	transcription start site region 112556	1480 bp downstream