rs259677939 SNP Detail

Summary

• ID
  rs259677939
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79164499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTCCAA GCCAGCCAGG
  GGTACCTATG AGACCTTGAC TCAATAAAAT AAAACTAATA TCAATACTCT AGTAATATAC
  TGAGCACAAT TCAATTTATT TAAGCAAGAT CTCACTTTGG AGCCCAACAT GTACAAAAAA
  GAAACAAAAA CAAAACCCAG AAACTGAAAG AGAAGCAGGG GTCTGTTACC TTCATTCCAC
  C
  GAAGAGGAAG AAGTTGAAAA TCAATAAATC TGCATTTTCT TTACCTAAAA CCTCTCCCTG
  GGTTCTAAGG GAGCAGCTGG CTTTGGCGCC TGGTGTGGCT TACCTCACCA GGCTTCACGG
  CTTCGTTCTC CATTTCTTTT TGTGTTGAGA GCAAAAGCAA GGGTTGGGAA CACTGGGACC
  TAAATGGAGC TGCCAGGTGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759448	CHEV_11_79087175	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259677939					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79164499 () rs orientation: forward

Symbol	Name	Function Class
D11Mit94	DNA segment, Chr 11, Massachusetts Institute of Technology 94	1076 bp proximal
Gm44787	predicted gene 44787	within coordinates
Rr241861	regulatory region 241861	701 bp proximal
Rr251784	regulatory region 251784	within coordinates
Tssr109475	transcription start site region 109475	207 bp downstream