rs259678801 SNP Detail

Summary

• ID
  rs259678801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91051791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGTGTCC CCAACCCACT
  CAGCTTAGGG GCGGGGCTCT GTGCTTCCTG ATGAGGGGAC CCTGAGCTCA GGGAATTTCC
  CTGGTCCCCG GGCTTTTCCA GACATCGTGC ATAAAAGGAG CTCTCGGGAC CTCAGAGCCC
  CAGACTGCGC CTCAGTGCCT CCAACAAGCT TCCTCGGGCA CTCCAGACTC CAGCCACACT
  Y
  CAGCCTAGCG CCATGGCCCC TCCCACCTGC CGGCTCCTCA GTGCTGCACT GGTCCTGCTG
  CTGCTGCTGG CCACCAACCA CCAGGCTACA GGTGGGATTC GGATTCGAGG CTGATGTTTC
  TGGGGAAGCC TCAGGTGGGC GCAGCCATCC CCAGCCCTTC TGACCCAGTG TCTTCTCCTA
  CAGGGGCTGT TGTGGCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847486	MGP_WTSI_5_91332958	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259678801					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847486	MGP_WTSI_5_91332958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91051791 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	728 bp upstream
Rr614420	regulatory region 614420	739 bp distal
Rr614421	regulatory region 614421	870 bp distal
Rr614422	regulatory region 614422	49 bp distal
Tssr47224	transcription start site region 47224	223 bp downstream
Tssr47225	transcription start site region 47225	121 bp downstream
Tssr47226	transcription start site region 47226	52 bp downstream
Tssr47227	transcription start site region 47227	137 bp upstream
Tssr47228	transcription start site region 47228	180 bp upstream
Tssr47229	transcription start site region 47229	207 bp upstream
Tssr47230	transcription start site region 47230	232 bp upstream
Tssr47231	transcription start site region 47231	252 bp upstream
Tssr47232	transcription start site region 47232	417 bp upstream
Tssr47233	transcription start site region 47233	434 bp upstream
Tssr47234	transcription start site region 47234	506 bp upstream
Tssr47235	transcription start site region 47235	1256 bp upstream
Tssr47236	transcription start site region 47236	1276 bp upstream
Tssr47237	transcription start site region 47237	1325 bp upstream
Tssr47238	transcription start site region 47238	1331 bp upstream
Tssr47239	transcription start site region 47239	1391 bp upstream
Tssr47240	transcription start site region 47240	1403 bp upstream
Tssr47241	transcription start site region 47241	1418 bp upstream
Tssr47242	transcription start site region 47242	1455 bp upstream
Tssr47243	transcription start site region 47243	1478 bp upstream
Tssr47244	transcription start site region 47244	1512 bp upstream
Tssr47245	transcription start site region 47245	1532 bp upstream
Tssr47246	transcription start site region 47246	1583 bp upstream
Tssr47247	transcription start site region 47247	1627 bp upstream
Tssr47248	transcription start site region 47248	1690 bp upstream
Tssr47249	transcription start site region 47249	1760 bp upstream
Tssr47250	transcription start site region 47250	1898 bp upstream
Tssr47251	transcription start site region 47251	1962 bp upstream
Tssr51810	transcription start site region 51810	789 bp upstream
Tssr51811	transcription start site region 51811	735 bp upstream
Tssr51812	transcription start site region 51812	269 bp downstream
Tssr51813	transcription start site region 51813	301 bp downstream
Tssr51814	transcription start site region 51814	1275 bp downstream
Tssr51815	transcription start site region 51815	1309 bp downstream
Tssr51816	transcription start site region 51816	1343 bp downstream