rs259679592 SNP Detail

Summary

• ID
  rs259679592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:66682618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGATGGGT AGATGGACAG
  ACAGAGACTT ATAACAAGAA GTACTCATAT GCCTACCCCT CAGGTGACTA GCAGATGGTT
  TGGTCTGATT TGCTGAAGAC TCTTAATGAG ACTTTCCAAT CCAAATTCAT GGGAGGACTG
  CAGTAAATAA CTTTCTACTT AACAGGAAAC AAAACATTAC CATTCTGCCA TCTCTATGAG
  Y
  GCAGAAGATA GATAAAGGTA ATCTGAAATA AGTAACCTAT GAATTTAAGG ACATTCTGTC
  ATCCTTTCCC CAGCCCAGAG AGACAGAGAG GTTTCTCTCT GTTAGGAACA CGTTCCACTT
  GTTGAGATAG ATACCCATTG TTGAGGCTTC CTTCTGTCCA CTGGAGCAAC AGCAGAAATT
  TGTCTTCAGA AAAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394379489	MGP_WTSI_15_66642331	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259679592					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394379489	MGP_WTSI_15_66642331	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66682618 () rs orientation: forward

Symbol	Name	Function Class
Rr503566	regulatory region 503566	372 bp distal
Rr503567	regulatory region 503567	within coordinates
Rr503568	regulatory region 503568	538 bp proximal
Rr503569	regulatory region 503569	1136 bp proximal
Rr503570	regulatory region 503570	1814 bp proximal
Sla	src-like adaptor	within coordinates
Tg	thyroglobulin	within coordinates
Tssr131484	transcription start site region 131484	1465 bp upstream
Tssr131485	transcription start site region 131485	1591 bp upstream
Tssr134583	transcription start site region 134583	626 bp upstream
Tssr134584	transcription start site region 134584	142 bp upstream
Tssr134585	transcription start site region 134585	1289 bp downstream
Tssr134586	transcription start site region 134586	1343 bp downstream
Tssr134587	transcription start site region 134587	1418 bp downstream
Tssr134588	transcription start site region 134588	1868 bp downstream
Tssr134589	transcription start site region 134589	1890 bp downstream
Tssr134590	transcription start site region 134590	1916 bp downstream
Tssr134591	transcription start site region 134591	1947 bp downstream