rs259679900 SNP Detail

Summary

• ID
  rs259679900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124047461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATACTGAG GTTGCTGGGG
  ATCCTGACTC AGTCTTTAGC CTTGCGTGGC AAGTCCTTCA TTGAATAAGA CTAAAGCATC
  TCCAGACAAA ACCTTTTTAT GCTGCCCTGG CTATCCTGGA ACTCCTTCTG TAGACCCGGC
  TGGCCTCAAA CTCAGAGATC CACCTGTCTC TGCCTCCCAA GTGCTGGGAT TAAAGGCGTG
  Y
  GCCACCACTG CTTGGCCCTG CTAGACTTTT TAATAAAATG AAGTTGGAGT TTAGTGAGAA
  ACAGGCTCCA CCTCCCTCCA CCTCCCACCC CCGTCACCAA GGGAAAGGGG GTTTATGTAA
  ATACCTGAGT GTATATGTGT GTGCCACGTG TGTGCAGGAA CCTGTGAGGG GTTAGAAGAG
  GGCATTGGAT CCCTTGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366549397	MGP_WTSI_5_124359407	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259679900					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366549397	MGP_WTSI_5_124359407	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124047461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16594	CpG island 16594	1524 bp distal
Denr	density-regulated protein	within coordinates
Rr124363	regulatory region 124363	660 bp distal
Tssr48812	transcription start site region 48812	1838 bp downstream
Tssr48813	transcription start site region 48813	1827 bp downstream
Tssr48814	transcription start site region 48814	1811 bp downstream
Tssr48815	transcription start site region 48815	1791 bp downstream
Tssr48816	transcription start site region 48816	1765 bp downstream
Tssr48817	transcription start site region 48817	1284 bp downstream
Tssr48818	transcription start site region 48818	1210 bp downstream
Tssr48819	transcription start site region 48819	290 bp downstream
Tssr48820	transcription start site region 48820	265 bp downstream
Tssr53283	transcription start site region 53283	1095 bp downstream