rs259684400 SNP Detail

Summary

• ID
  rs259684400
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11351112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTATTC TTTGCTACTA
  ATTTTATCTT TCACTGGCCC ATTGAGAATG AATGGTAGAG CCTAGCTCAT TAAGACTCCA
  AAGGCTCCAA CCCAAATGAC TCTAATACTA GAGTTTTACA TGTTACAAAG CCCAAGGTCC
  CAGATCTACA GTGACTTAAA AAATACATGC TATTAAAAAA TACTATTGTA TTCTAGTACT
  K
  CTATGACTAC ATCTGGATTG TACCAGATCC AGTCCTTGTA GTGGTTGCTT CAGTTAATTC
  TCACTAGTAT GGGGGAAATG ATAATAAAAT AACCTCAAAC CACTGCTACT AAGAAAACCT
  TTTCTTCCTC CACTGCCTCA ACATTGATAA TAACTTCTAC AGCTTCAACC ACCAAGGCAC
  CTTCAGTTAT TAATGAGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401749825	MGP_WTSI_19_11448238	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259684400					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401749825	MGP_WTSI_19_11448238	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11351112 () rs orientation: forward

Symbol	Name	Function Class
Ms4a4a	membrane-spanning 4-domains, subfamily A, member 4A	1775 bp upstream
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544326	regulatory region 544326	1225 bp proximal
Tssr155162	transcription start site region 155162	1208 bp downstream
Tssr155163	transcription start site region 155163	1192 bp downstream
Tssr155164	transcription start site region 155164	1161 bp downstream
Tssr155165	transcription start site region 155165	1076 bp downstream
Tssr155166	transcription start site region 155166	1035 bp downstream
Tssr155167	transcription start site region 155167	1710 bp upstream
Tssr155168	transcription start site region 155168	1740 bp upstream
Tssr155169	transcription start site region 155169	1789 bp upstream
Tssr155170	transcription start site region 155170	1818 bp upstream
Tssr155171	transcription start site region 155171	1833 bp upstream
Tssr155172	transcription start site region 155172	1848 bp upstream
Tssr158339	transcription start site region 158339	1487 bp upstream
Tssr158340	transcription start site region 158340	1375 bp upstream
Tssr158341	transcription start site region 158341	1358 bp upstream
Tssr158342	transcription start site region 158342	799 bp upstream