rs259692104 SNP Detail

Summary

• ID
  rs259692104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103060371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCATCAG TAAGCAGACA
  GCTGGGCACA CAGCTGGGGC TCGAAGGAAA CATTTGTTGA TGAATTGAAA GAGACAGCTA
  TGGAAGAATC AGGAAGTACA GTCTTTAATA AATAAACAAA AATCTCTCAA CTACTAATCT
  CAGGCAAGGC CCAAGGTCAA GGCTAAGGAA GATGGAGGTA GGCATAGGGC AGGTACCCTT
  Y
  CTATAGGCTC CAGGAGACCC TGTTTCCACC CACCCTGGAA GTCCTTGCTC AGGACATGAA
  ATGAGACTAT CTCTCCCATG GTGACAGGGG CGATGGTGAA CTTGGCAGGA GGAAGGCTTT
  AATCAGGTCA AGCTGGGGAG CGTGCAGGTT TGTGTCTGGT TTTCCTCATA ATTAGATAAT
  TAATTTCCCA GTTCCTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384517785	MGP_WTSI_11_103030859	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259692104					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384517785	MGP_WTSI_11_103030859	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103060371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3957	CpG island 3957	1002 bp proximal
Fmnl1	formin-like 1	1562 bp upstream
Gm51919	predicted gene, 51919	within coordinates
Rr403012	regulatory region 403012	451 bp downstream
Rr457536	regulatory region 457536	1180 bp distal
Rr457537	regulatory region 457537	297 bp distal
Rr457538	regulatory region 457538	608 bp proximal
Rr457539	regulatory region 457539	718 bp proximal
Rr457540	regulatory region 457540	1372 bp proximal
Tssr105316	transcription start site region 105316	871 bp upstream
Tssr105317	transcription start site region 105317	948 bp upstream
Tssr105318	transcription start site region 105318	1182 bp upstream
Tssr105319	transcription start site region 105319	1212 bp upstream
Tssr105320	transcription start site region 105320	1301 bp upstream
Tssr105321	transcription start site region 105321	1418 bp upstream
Tssr105322	transcription start site region 105322	1447 bp upstream
Tssr105323	transcription start site region 105323	1536 bp upstream