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rs259694664 SNP Detail
Summary
  • ID
    rs259694664
  • Variation Type
    SNP
  • Alleles
    A
Genome Location and Flanking Sequence
  • Location
    Chr4:57923204 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGCAT GGATTCTGGG GACAGAACTG
    A
    AGCCACCAGG CTTCCAGGAC GAGTG                                      
    
    A = A
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321136036 CHEV_4_57936076 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs259694664 SNP A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:57923204 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm42292 predicted gene, 42292 within coordinates
Gm52700 predicted gene, 52700 300 bp downstream
Rr94514 regulatory region 94514 404 bp distal
Rr98485 regulatory region 98485 734 bp distal
Rr376550 regulatory region 376550 1724 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory