rs259696831 SNP Detail

Summary

• ID
  rs259696831
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138149008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA GGGGAACGCC CGGGTGGCCC
  K
  CTGCCGCCCG CCGGGGAAGG CGAGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320980175	CHEV_3_138106211	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259696831					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138149008 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide			Coding-Synonymous
				Intron
Cpgi13874	CpG island 13874			within coordinates
Gm64924	predicted gene, 64924			within coordinates
Rr398071	regulatory region 398071			12 bp downstream
Rr586135	regulatory region 586135			660 bp distal
Rr586136	regulatory region 586136			144 bp distal
Rr586137	regulatory region 586137			within coordinates
Rr586138	regulatory region 586138			306 bp proximal
Rr586139	regulatory region 586139			1161 bp proximal
Tssr31984	transcription start site region 31984			71 bp downstream