rs259707205 SNP Detail

Summary

• ID
  rs259707205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122828227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGGAAC CAGACTGTGT
  TCACGGTCGT CTTCATCTTT ACGCCAGCTA CCCACAGCAC CAGCCCATTG CCTAGCAGTC
  CCAATAGACA AGTGAGACCA AGAATGACCA TGGAGGCAAT GTCTTGGGGT TGAAACAGAG
  GCCGTGAGTG TAGGTCAGTT GAATTGGTGT CAGCATCGAA AGACTCCATG GCTCAGTCTG
  Y
  GAAATGACAA AGAAGATGTT AAAGCTCATG GTGAATTTAT AAAAGTATGT GCTTTTAGGA
  GTCTTATGTG ATGGTACACC CTCTCAAAGC CAGAGGCCCC CCTCACAGAA CCTCGTTAGC
  ACTCCTTCCT CAGAATAGAC ACATTTTCTG ATAGACAGTT TCAGGTCTAT GCTATTGATT
  TAAATAGGTA TCTAAAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914802	MGP_WTSI_6_122801286	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259707205					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914802	MGP_WTSI_6_122801286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122828227 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Rr142690	regulatory region 142690	1422 bp proximal
Tssr58711	transcription start site region 58711	759 bp downstream
Tssr58712	transcription start site region 58712	678 bp downstream
Tssr58713	transcription start site region 58713	610 bp downstream
Tssr58714	transcription start site region 58714	1667 bp upstream
Tssr62983	transcription start site region 62983	1771 bp upstream
Tssr62984	transcription start site region 62984	1675 bp upstream
Tssr62985	transcription start site region 62985	1636 bp upstream
Tssr62986	transcription start site region 62986	1341 bp upstream
Tssr62987	transcription start site region 62987	1215 bp upstream
Tssr62988	transcription start site region 62988	1149 bp upstream
Tssr62989	transcription start site region 62989	989 bp upstream
Tssr62990	transcription start site region 62990	936 bp upstream
Tssr62991	transcription start site region 62991	907 bp upstream
Tssr62992	transcription start site region 62992	857 bp upstream
Tssr62993	transcription start site region 62993	764 bp upstream
Tssr62994	transcription start site region 62994	587 bp upstream
Tssr62995	transcription start site region 62995	533 bp upstream
Tssr62996	transcription start site region 62996	396 bp upstream
Tssr62997	transcription start site region 62997	330 bp upstream
Tssr62998	transcription start site region 62998	259 bp upstream
Tssr62999	transcription start site region 62999	206 bp upstream
Tssr63000	transcription start site region 63000	183 bp upstream
Tssr63001	transcription start site region 63001	167 bp upstream
Tssr63002	transcription start site region 63002	1580 bp downstream