About   Help   FAQ
rs259710530 SNP Detail
Summary
  • ID
    rs259710530
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr5:30745995 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCTGGAGCTG CGGGCGCGCT
    ACAACCTCAG CGAGGGCGGC TACGAGGAGC TGGAGCGCGT CGTGCTGCGC CTCAAGCCGC
    ACAAGGCCGG CGTGCAGTGG CGCTTCGCCG GCTCCTTCTA CTTCGCCATC ACCGTCATCA
    CCACCATCGG TAACTACACT CGCCGCGCCG GCGGGGACGG GGGCGGGGAC CTGGGATGCT
    G
    GGGAGCCGCC CGCGGCTGAG GGGTCCCTGC GGAGCGGGGC GGGTCGCCGA ACCCGCGCGC
    TCCCAGTGGC CGGGGCTCAG CCCGGTGTGT CTGCTCTGCG GGAACCCCTG ACTTCGACCT
    GTCTCCAGTC CGGCCAGCCC TAAGTTGGCC TTGCCGGGCT GTGCGAGGAC CCCAGGGGAC
    TTAAGTGTGT GAGAGGGACA                                            
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss364424461 MGP_WTSI_5_30891024 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259710530 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss364424461 MGP_WTSI_5_30891024 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:30745995 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15680 CpG island 15680 within coordinates
Del(5D5Mit348-D5Mit389)6Jcs deletion, Chr 5, John C. Schimenti 6 within coordinates
Gm9899 predicted gene 9899 32 bp upstream
Kcnk3 potassium channel, subfamily K, member 3 within coordinates
Rr124994 regulatory region 124994 within coordinates
Tssr45584 transcription start site region 45584 1245 bp downstream
Tssr45585 transcription start site region 45585 600 bp downstream
Tssr45586 transcription start site region 45586 480 bp downstream
Tssr45587 transcription start site region 45587 466 bp downstream
Tssr45588 transcription start site region 45588 431 bp downstream
Tssr45589 transcription start site region 45589 1405 bp upstream
Tssr50495 transcription start site region 50495 172 bp upstream
Tssr50496 transcription start site region 50496 87 bp downstream
Tssr50497 transcription start site region 50497 109 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory