rs259719095 SNP Detail

Summary

• ID
  rs259719095
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134656665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTGGAG ATGTAGCCTA
  GTTGGTAAAT ATCCAGCAAG GTATAGAACA TATGTGGTAG TGCAGGTCTG TTATCCCAGA
  ACTCTGGAGG TAGCAGTCAG GATCAGAAAA TGAAGATTAG CTGAGGCTAA TGAGGGCACA
  GGTATTTCAT CCCACGAGAG GCAGTAGGAT CTCTGAATTC AAGACCAGGA TGGTCTTCAG
  K
  GAGTTCCAGG ACGGGCAGAC AGTATAGGGA GACTCAAGAA ACAAAGACAT ATTAAAAGTG
  ATTCAGAGGA CGACAGTGAC AGCAACTGAA GGTGGTGACA GATTTGTCAA GGCATATTGA
  GTATATGCTA GTTTACATAT AAAATTGCAA TTATAGAAAT GAAACATCTC TGACATGAGA
  AGATAATCAC AGGATGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363351980	MGP_WTSI_4_134485269	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	G	T	T	T	G	T	T	G	T	T	T	T	G	G	T	T	T	T	G	T	T	G	G	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259719095					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	G	T	T	T	G	T	T	G	T	T	T	T	G	G	T	T	T	T	G	T	T	G	G	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363351980	MGP_WTSI_4_134485269	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134656665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15054	CpG island 15054	1319 bp proximal
Rr367744	regulatory region 367744	680 bp upstream
Rsrp1	arginine/serine rich protein 1	1984 bp downstream
Syf2	SYF2 homolog, RNA splicing factor (S. cerevisiae)	1626 bp upstream
Tssr39596	transcription start site region 39596	1545 bp upstream
Tssr39597	transcription start site region 39597	1564 bp upstream
Tssr39598	transcription start site region 39598	1592 bp upstream
Tssr39599	transcription start site region 39599	1863 bp upstream
Tssr43947	transcription start site region 43947	1983 bp upstream