rs259723621 SNP Detail

Summary

• ID
  rs259723621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84928812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGCTGTG ACACTCCTGC
  CTCAGCTTCC TGAGTGCTGG CATGACAAGA TACAGCACCA TACCTACCCT GTTCCCATAG
  CAGCATCGGG CTAGTTACTT TTGTTTTCTG AGTCTGTTGT AACCCAGGCT AGCCTCAAAT
  TTCTGATCCT CCTGTCTCCG CACCTGAGTA CTGCACCATC CCTGGCTTCC ACAGTCCTGG
  K
  GATTGAACTC CGGCCCTGGG CATGCCAGGC GAGCACTCCA CTCTTTGAGC TACATCTTTG
  TCTCCTGTTT AGTTGACAGA GACAGGGTTT CTTGTAGTCT GGGCTAGCCT CAAACTTGCC
  ATGAAACTAA CGGCGGACTT GAGCTCCGCA TTCTCTTTCC TGCAACTCTC AAGTGCTAGG
  GTTATGGGCA TGGGCCACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375393407	MGP_WTSI_8_86726082	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259723621					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375393407	MGP_WTSI_8_86726082	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84928812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20683	CpG island 20683	329 bp distal
Cpgi20684	CpG island 20684	1241 bp proximal
Gm37352	predicted gene, 37352	within coordinates
Gm56841	predicted gene, 56841	537 bp downstream
Gm64014	predicted gene, 64014	1440 bp upstream
Gm64130	predicted gene, 64130	518 bp upstream
Gm65345	predicted gene, 65345	within coordinates
Rr186983	regulatory region 186983	within coordinates
Tssr78372	transcription start site region 78372	1337 bp downstream
Tssr78373	transcription start site region 78373	1308 bp downstream
Tssr78374	transcription start site region 78374	1236 bp downstream
Tssr78375	transcription start site region 78375	390 bp downstream
Tssr82082	transcription start site region 82082	1528 bp upstream
Tssr82083	transcription start site region 82083	1433 bp upstream
Tssr82084	transcription start site region 82084	515 bp upstream
Tssr82085	transcription start site region 82085	213 bp upstream
Tssr82086	transcription start site region 82086	191 bp upstream
Tssr82087	transcription start site region 82087	166 bp upstream
Tssr82088	transcription start site region 82088	1300 bp downstream
Tssr82089	transcription start site region 82089	1338 bp downstream
Tssr82090	transcription start site region 82090	1485 bp downstream
Tssr82091	transcription start site region 82091	1926 bp downstream