rs259724981 SNP Detail

Summary

• ID
  rs259724981
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:76889494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC CCGGGACCCG CCGCCGCGCC
  K
  CCCGCAGGTG GGTCGCTTTC CCTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323754481	CHEV_11_76812170	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259724981					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:76889494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3300	CpG island 3300	1001 bp distal
Cpgi3301	CpG island 3301	within coordinates
Gm72068	predicted gene, 72068	817 bp downstream
Rr247222	regulatory region 247222	within coordinates
Rr366811	regulatory region 366811	21 bp downstream
Slc6a4	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	within coordinates
Tssr103121	transcription start site region 103121	68 bp downstream