rs259726408 SNP Detail

Summary

• ID
  rs259726408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCAAGT TGGACTCGAA
  CCTGCAATTT TCCTGCCTTT GCCTCTCACA TGCTGGGAGA CAAATGAAAG AACTTAGGGA
  AGCGCAGAAA ACCATCACCA CTACAGGATC GTCCCAGAAG GCAGAATCTC GCCCACAGAG
  AAACTGTAAC TGAAAAGTAC AGAAGTTACT ATTCTTGAAA AGCCAGTAAC TCTTTTGATT
  Y
  TGTTTAAGGA TGGTTTTCCT GAGCCAGTGA AATGGCTCAG TGCGCAAAGG GGCTTGCTGC
  CAAATCTGAT AACCTAAGTT CAGTTCCCGG AACCCACATG GACTATCTGT GCCACGGCAT
  GTATGAGACC GCGCGCGCGC GCGCACACAC ACACACACAC ACACACGTAA AAACCATCAA
  AAAGTAGTCA TTCCCCTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513537	CHEV_10_121022217	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259726408					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	1086 bp proximal
Rr402304	regulatory region 402304	711 bp upstream
Rr402305	regulatory region 402305	1565 bp upstream
Rr440247	regulatory region 440247	95 bp proximal
Rr440248	regulatory region 440248	1616 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	1056 bp upstream
Tssr96044	transcription start site region 96044	1092 bp upstream
Tssr99623	transcription start site region 99623	712 bp downstream
Tssr99624	transcription start site region 99624	740 bp downstream
Tssr99625	transcription start site region 99625	761 bp downstream
Tssr99626	transcription start site region 99626	1549 bp downstream
Tssr99627	transcription start site region 99627	1569 bp downstream
Tssr99628	transcription start site region 99628	1652 bp downstream
Tssr99629	transcription start site region 99629	1680 bp downstream
Tssr99630	transcription start site region 99630	1708 bp downstream