rs259733204 SNP Detail

Summary

• ID
  rs259733204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152182590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAAGAA AATTGTGTCC
  CTTAATTAGG CCCTCCTCTC CGGAACCTAC AGTTTAGCTC AGTCTCCACT GTGTCCACTG
  AGACCAGAAC CTTGGCTTGG CTGGAATGTA GCCACACCTG GCATTGACTG CCGGAAGCTC
  TCCTAGTCAG CAGGGGGCTG AAGCAGGGAG CCCTGGCCAG GCTGGTGGAG TAGGTAGTGC
  Y
  TGGGAAAAGG GATTGAAGGG AAAGCTGGTG CCTCCGCAGA CTGTTGTCAG AAGGAGGCAC
  TTAAAGCTGG GAGGCCCCCC CCAGATTTCT CTACATGCCC TGGGACTCAT GGCTGTAGGT
  AGGTAAATGT TTTCCTGCCT TTATCTGCAG TAGATTAAAA CAGGAACTGA AAATATTTCC
  AAGTCTTGAC CACCCGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363705215	MGP_WTSI_4_151472242	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259733204					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363705215	MGP_WTSI_4_151472242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152182590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	1183 bp distal
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr377434	regulatory region 377434	within coordinates
Rr605737	regulatory region 605737	1954 bp distal
Rr605738	regulatory region 605738	1404 bp distal
Rr605739	regulatory region 605739	1815 bp distal
Rr605740	regulatory region 605740	within coordinates
Rr605741	regulatory region 605741	43 bp proximal
Tssr40496	transcription start site region 40496	1417 bp downstream
Tssr40497	transcription start site region 40497	1351 bp downstream