rs259733513 SNP Detail

Summary

• ID
  rs259733513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44510206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGGAGG CCATGCTCTT
  GGAGACCAAC TTGAGGAACT TCCCTGGACA CACCCAGTGC CCTGTCCAGG GGCTCCTAGT
  CCCAAGTGAG AAATGGTACC TTGCCCTTTT CATTGCTGGC CACCACCTGG GCTTCGGGGA
  AAACTTTGTG GGCCCAGGCT CCATTAGACA TAAAGGGTGC AGAAGGGGAA TGGGGAGTAG
  Y
  TCCATCTTTC CATTTTTGGG GGGAAGGGCT AGGGACAACT GTCCTATACT GTTTCCATCC
  CCATGAGCAC AGGGTTGGGA GTGGTTGGTA GTGAGAGTGA ATTGGGTAAC TAGGCTAGAA
  GCGAAAGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTGTC
  CGATAGTGTC CGGCAGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201292	MGP_WTSI_11_44432881	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259733513					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201292	MGP_WTSI_11_44432881	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44510206 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2763	CpG island 2763			750 bp distal
Cpgi2764	CpG island 2764			393 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175			102 bp proximal
Ebf1	early B cell factor 1			Intron
				Noncoding-Transcript-Variant
Rr445654	regulatory region 445654			663 bp distal
Tssr3469	transcription start site region 3469			1438 bp upstream
Tssr101032	transcription start site region 101032			1982 bp downstream
Tssr101033	transcription start site region 101033			1866 bp downstream
Tssr101034	transcription start site region 101034			1836 bp downstream
Tssr101035	transcription start site region 101035			1821 bp downstream
Tssr101036	transcription start site region 101036			1749 bp downstream
Tssr101037	transcription start site region 101037			1719 bp downstream
Tssr101038	transcription start site region 101038			1676 bp downstream
Tssr101039	transcription start site region 101039			1492 bp downstream
Tssr101040	transcription start site region 101040			1444 bp downstream
Tssr101041	transcription start site region 101041			1244 bp downstream
Tssr101042	transcription start site region 101042			1175 bp downstream
Tssr101043	transcription start site region 101043			1156 bp downstream
Tssr101044	transcription start site region 101044			788 bp downstream
Tssr101045	transcription start site region 101045			1771 bp upstream
Tssr101046	transcription start site region 101046			1803 bp upstream
Tssr101047	transcription start site region 101047			1817 bp upstream
Tssr101048	transcription start site region 101048			1832 bp upstream
Tssr107570	transcription start site region 107570			1310 bp upstream