rs259738158 SNP Detail

Summary

• ID
  rs259738158
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:35701000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCACAAG CTTAAGTTTC
  TTTAAATAAA TAATACCATT GACTGGGCTC ACTGAAGGAA GCTCTTTACA CCAAAGCCCA
  TTTTACCTAC CATATCACTG AGTTGAAATA GCAATTCCTC ATAATATTTT TCTAACCTAT
  AATACTGAGA AATTAGAAGT ATAAAAATAA ACTCTTGTTT CTTGATAAAA TAAATACAAT
  K
  TTCTATTTAT GTAAAATTTC CAATGTGGAC GATCTTTGTA TTAAAAGTCC AGTGTAACTA
  CCTCTCCCAG CCCCAGCATG CCATACTATT CCATAAATAT TTAGATAGGG AGCACATGAT
  TTTTTTCAAC TTTATGAATA CTCTCATATG TAATTTCAGT ATGCTTTAAC CACTCTTCCT
  CCTTTTAACT GTATTTGATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324921786	CHEV_15_35630609	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259738158					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:35701000 () rs orientation: forward

Symbol	Name	Function Class
Rr647	regulatory region 647	515 bp proximal
Rr309492	regulatory region 309492	371 bp proximal
Vps13b	vacuolar protein sorting 13B	within coordinates