rs259752376 SNP Detail

Summary

• ID
  rs259752376
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48531169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGTGAAC AACAACAAAA
  CTGTGCCTAT ACTTAGCCAG CCCAGGCTGG AAGGGTGTGG ACTGAACTGG GATTGCTTTG
  TCTGAGTGCA CAGAAAGCAT CAGGAGATGG AAAACCCTCC CAATGTAGAC ATTTCCAAGT
  GGCCTGTGAA AGAAAGTGAG AGGCATTCTC CCCTGTGCCT AGTTAAGGTG ACCTCTTTAT
  S
  CGTTGGACAA TGTCATTTAC AAAGGTGGCA GTTTGCGTTG GTGACATCTC TGGGGGCAAG
  GCCTTTGGGA ATATCACTAG GCAGTGCACA TTTATCTCAG GAAACATTCT GATGTAGTTT
  TCTAAAAATA CGGGTAAGGT TCCCACAAGG GGTCCTTCTT ATCGTTATTG TGGCACCTTT
  TGTCTGCAGT CCTAGGCGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368224003	MGP_WTSI_6_48504234	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259752376					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368224003	MGP_WTSI_6_48504234	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48531169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	222 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	within coordinates
Lrrc61	leucine rich repeat containing 61	563 bp upstream
Rr399635	regulatory region 399635	283 bp upstream
Rr629686	regulatory region 629686	1017 bp distal
Rr629687	regulatory region 629687	within coordinates
Rr629688	regulatory region 629688	528 bp proximal
Rr629689	regulatory region 629689	581 bp proximal
Tssr56137	transcription start site region 56137	541 bp upstream
Tssr56138	transcription start site region 56138	695 bp upstream
Tssr60734	transcription start site region 60734	422 bp downstream
Tssr60735	transcription start site region 60735	439 bp downstream
Tssr60736	transcription start site region 60736	482 bp downstream