rs259763300 SNP Detail

Summary

• ID
  rs259763300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:47720600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGGAGTG GAGGAGGAGG
  GCTACGGGGT TGCTGAAGAG AAGGGAGCTG GGGGGAGCGC GCTTTCTGTG GTGGGGGGAC
  GGGGTGGGGA AAGGGGGAGC TGAGTGGGGT GCGGGGACGG GGGGAGGGCT TTCTGTGGTG
  AGGAGGGAGG GGAAAGGGGG AGGGAGAGTG GGCGGGGCTT TGTGGAGAAG ATGGACGGGG
  Y
  TGGGGAGGAG GGCGGAGTCT TTGACCATAG TAAACCCAAA GGGGCAGATG CTGCTTTCTG
  ACACCTCGGG ACTCGTTCTT GGTTCTAGGC GCAAAGCTTT TAAGAGTCAA GATTCAGGCT
  GTATTGCTTT TATTTACGAA ATTATAACAA AAATTAAAGT TCTTGACTAG TTATAGTTCC
  CCTTCCTGAA ACGCAAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402629563	MGP_WTSI_19_47806651	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259763300					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402629563	MGP_WTSI_19_47806651	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47720600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11035	CpG island 11035	40 bp distal
Gm58934	predicted gene, 58934	602 bp upstream
Rr370527	regulatory region 370527	887 bp downstream
Rr406020	regulatory region 406020	within coordinates
Rr549123	regulatory region 549123	613 bp distal
Rr549124	regulatory region 549124	943 bp distal
Rr549125	regulatory region 549125	802 bp distal
Rr549126	regulatory region 549126	674 bp distal
Rr549127	regulatory region 549127	469 bp distal
Rr549128	regulatory region 549128	within coordinates
Sfr1	SWI5 dependent recombination repair 1	Intron
Tssr156884	transcription start site region 156884	393 bp downstream
Tssr156885	transcription start site region 156885	364 bp downstream
Tssr156886	transcription start site region 156886	784 bp upstream
Tssr156887	transcription start site region 156887	1491 bp upstream