rs259766884 SNP Detail

Summary

• ID
  rs259766884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTAAACT CCTCTAAATT
  ATATGTCATA TTAACTGGTT AAATTAATAT AAATTTGTGA CATGACCTTA ACTGGTTAGG
  TAGGATATTT TTCTTCATGC AAAAATATGA CTAATAATAA TTTAGCACAA AAATATTTCC
  CAATACTTTA ATTCTGTGAT AGAAAAATGT TTAACTCAGC TACTATAATC CCATAATTTT
  R
  AAAACTATTT ATTAGCTTTT GTGTTTGACC CTTCCCTAGC CAAAGGCAAC TATTTAAGGA
  CCCTTTAAAA CTCTTGAAAC TACTTTAGAG TCATTAAGTT ATTTAACCAC TTTTAATTAC
  TTTAAAATGA TGTCAATTCC CTTTTAACTA TTAATTTATT TTAAGGGGGG AAAGGCTGCT
  CATAATTCTA TTGTTTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368707597	MGP_WTSI_6_70675482	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259766884					SNP	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368707597	MGP_WTSI_6_70675482	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702472 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	958 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	947 bp upstream
Igkj4	immunoglobulin kappa joining 4	1903 bp downstream
Igkj5	immunoglobulin kappa joining 5	1565 bp downstream
Rr158	regulatory region 158	463 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	53 bp downstream
Rr399685	regulatory region 399685	59 bp upstream
Rr399686	regulatory region 399686	1023 bp upstream
Tssr1880	transcription start site region 1880	1362 bp upstream
Tssr56953	transcription start site region 56953	1941 bp downstream
Tssr56954	transcription start site region 56954	1809 bp downstream
Tssr56955	transcription start site region 56955	1588 bp downstream
Tssr56956	transcription start site region 56956	320 bp upstream
Tssr56957	transcription start site region 56957	942 bp upstream
Tssr56958	transcription start site region 56958	989 bp upstream
Tssr56959	transcription start site region 56959	1007 bp upstream
Tssr56960	transcription start site region 56960	1030 bp upstream
Tssr56961	transcription start site region 56961	1044 bp upstream
Tssr56962	transcription start site region 56962	1052 bp upstream
Tssr56963	transcription start site region 56963	1101 bp upstream
Tssr56964	transcription start site region 56964	1116 bp upstream
Tssr56965	transcription start site region 56965	1122 bp upstream
Tssr56966	transcription start site region 56966	1133 bp upstream
Tssr56967	transcription start site region 56967	1148 bp upstream
Tssr56968	transcription start site region 56968	1172 bp upstream
Tssr56969	transcription start site region 56969	1208 bp upstream
Tssr56970	transcription start site region 56970	1221 bp upstream
Tssr56971	transcription start site region 56971	1241 bp upstream
Tssr56972	transcription start site region 56972	1267 bp upstream
Tssr56973	transcription start site region 56973	1305 bp upstream
Tssr56974	transcription start site region 56974	1337 bp upstream
Tssr56975	transcription start site region 56975	1370 bp upstream
Tssr61321	transcription start site region 61321	994 bp downstream
Tssr61322	transcription start site region 61322	1159 bp downstream
Tssr61323	transcription start site region 61323	1174 bp downstream
Tssr61324	transcription start site region 61324	1264 bp downstream
Tssr61325	transcription start site region 61325	1330 bp downstream
Tssr61326	transcription start site region 61326	1365 bp downstream
Tssr61327	transcription start site region 61327	1379 bp downstream
Tssr61328	transcription start site region 61328	1470 bp downstream