rs259778042 SNP Detail

Summary

• ID
  rs259778042
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60962740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTCATT AACTCCATTA
  CAAAATTAAA TTCAGCAAGA ACATATTTTC TTGGTGACTG TGCCAATTCT TCCTCTTAAA
  ATTATTTTTA ATTTTCATGT GCATACATGT TAGTCGTAAG TGCCTGAAAA GGCCAGAGAC
  ATCACATCCC TCCAAGTTAC AAGTGGTTGT AAACCACCCA GTGTGGGTGC TGGGAATGGA
  M
  CAAGGGTCCT TAGTGCTCTT AGCCCTTGGT TATCTCTCTA AGCCCAACTG TGTTGGTTCT
  TAGGAAGACA ATGGGAATCC CGGAGTTCTG TAAATTCTCT ATTTCCAAAG ACAGAATAAT
  AACAAAGTAA AACAGGTCAT GACAAGTTTT TGGGGTAGGC AACCAAGTGA TCATGGAAAT
  TACTTTTGGC TTAATCTTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323327730	CHEV_10_60589709	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259778042					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60962740 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1726 bp upstream
Rr219927	regulatory region 219927	661 bp proximal
Rr228137	regulatory region 228137	1262 bp proximal
Sgpl1	sphingosine phosphate lyase 1	within coordinates