rs259779575 SNP Detail

Summary

• ID
  rs259779575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115472567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGGGCAG AGGAGGGAGG
  AAGTTGTTTT TCAGACAGAA TGAGTCTGAG TATTTGATCC ATTTCCTTGG AAGCAGGCTT
  GTGGTTTTCT GCTAGCTGGG TGTTGTCCAG TTGTCTTCGG ATCAATTACC AAGAAACTGT
  AAATCCAGTT TATACTAGAT AGAGTTCACA GTAGCAAATG ACCACCCTTG TGAGTCCACC
  R
  TGTTGACAGG GTGCCCCTTC CCCAGAATAG CTACTCTGCT GTGGAAGAAG GAATCTTGTT
  TACCATGTCT GGCAAGGAAA TATTACCTGT TTGAAAAATA AGAAGAACAT TAGAGTTGAG
  CCTGATGTCC AGCTGGCTCT CCTAAACTAA CTGGTCACTT GGATTTCACG GAGAACTGGA
  AGTAAGTATT GGTGCCGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366354272	MGP_WTSI_5_115784517	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259779575					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366354272	MGP_WTSI_5_115784517	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115472567 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	within coordinates
Srsf9	serine and arginine-rich splicing factor 9	1428 bp downstream
Tssr48220	transcription start site region 48220	1715 bp downstream
Tssr48221	transcription start site region 48221	1636 bp downstream
Tssr52783	transcription start site region 52783	444 bp upstream
Tssr52784	transcription start site region 52784	413 bp upstream
Tssr52785	transcription start site region 52785	339 bp upstream
Tssr52786	transcription start site region 52786	268 bp upstream
Tssr52787	transcription start site region 52787	228 bp upstream
Tssr52788	transcription start site region 52788	10 bp upstream
Tssr52789	transcription start site region 52789	8 bp downstream