rs259783978 SNP Detail

Summary

• ID
  rs259783978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTGGGT GACTTTTCAG
  CCAAATCTCT CTCCTAAGAA ATGCGCGTTC TCCGAGTTGT TTGGAGTGCT GACCAGGAAG
  ACAGGGCATA CATAATCAGA AGGAAAATGG AAAGTTCCTG GAGGCTGCTT CCAAAATGGC
  AAGCTGGGAA GAAAAGACAG TTCTGTAGAA TAAGCTGAGG ACACCAGACA CGGACACAAA
  R
  ACACACGATA GGGTGGAAAG ACACAGGACA CACAGGACCA TTAAGGGAAA GATACTGGAT
  ACATGGTGTG TGGCCTGGCC AAAACTATAG CCCGATTATA AGTGAAAGGC AAAGAGGCTG
  AGAGAAGTTA GCCGGTGCAC CACCCTCAGA GACTCCAGGG AGTCAAGTGC ATCCTTGGAC
  ATTCCTGAGA CTGTGTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377313605	MGP_WTSI_9_40264349	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259783978					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377313605	MGP_WTSI_9_40264349	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	397 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1339 bp distal
Rr676840	regulatory region 676840	510 bp distal
Rr676841	regulatory region 676841	908 bp distal
Rr676842	regulatory region 676842	1917 bp proximal
Tssr84449	transcription start site region 84449	1443 bp downstream
Tssr84450	transcription start site region 84450	854 bp downstream
Tssr84451	transcription start site region 84451	891 bp upstream
Tssr84452	transcription start site region 84452	919 bp upstream
Tssr84453	transcription start site region 84453	1660 bp upstream
Tssr88934	transcription start site region 88934	1380 bp upstream
Tssr88935	transcription start site region 88935	1329 bp upstream
Tssr88936	transcription start site region 88936	1308 bp upstream
Tssr88937	transcription start site region 88937	1244 bp upstream
Tssr88938	transcription start site region 88938	987 bp upstream
Tssr88939	transcription start site region 88939	952 bp upstream
Tssr88940	transcription start site region 88940	920 bp upstream
Tssr88941	transcription start site region 88941	631 bp upstream
Tssr88942	transcription start site region 88942	616 bp upstream
Tssr88943	transcription start site region 88943	588 bp upstream
Tssr88944	transcription start site region 88944	540 bp upstream
Tssr88945	transcription start site region 88945	523 bp upstream
Tssr88946	transcription start site region 88946	427 bp upstream
Tssr88947	transcription start site region 88947	398 bp upstream
Tssr88948	transcription start site region 88948	368 bp upstream
Tssr88949	transcription start site region 88949	708 bp downstream