rs259785744 SNP Detail

Summary

• ID
  rs259785744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTTTAAAA AAGTTTTTAT TTTTTCATTT CCTTTTTCTG
  AACAGTAACT CTTAATGTGG TATCTAAGGC AAAGCGTGTA AAGGGAATCT ATTAATTCCC
  Y
  AAACACATCA GGCTTATTTT GTTCTGTTAT AGAGCCAAAT GTATGTTTCT CCAGGTTAGC
  TCTGTTTCGA TTGAATTTAG GGCAGGTGGC TCGCATGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322371905	CHEV_7_113648732	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259785744					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104425 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1580 bp downstream
Tssr74117	transcription start site region 74117	1692 bp upstream
Tssr74118	transcription start site region 74118	1645 bp upstream
Tssr74119	transcription start site region 74119	1247 bp upstream
Tssr74120	transcription start site region 74120	1230 bp upstream
Tssr74121	transcription start site region 74121	1167 bp upstream
Tssr74122	transcription start site region 74122	1150 bp upstream
Tssr74123	transcription start site region 74123	1117 bp upstream
Tssr74124	transcription start site region 74124	1072 bp upstream
Tssr74125	transcription start site region 74125	1061 bp upstream
Tssr74126	transcription start site region 74126	1025 bp upstream
Tssr74127	transcription start site region 74127	874 bp upstream
Tssr74128	transcription start site region 74128	794 bp upstream
Tssr74129	transcription start site region 74129	263 bp upstream
Tssr74130	transcription start site region 74130	214 bp upstream
Tssr74131	transcription start site region 74131	3 bp upstream
Tssr74132	transcription start site region 74132	123 bp downstream
Tssr74133	transcription start site region 74133	822 bp downstream
Tssr74134	transcription start site region 74134	1049 bp downstream
Tssr74135	transcription start site region 74135	1132 bp downstream
Tssr74136	transcription start site region 74136	1200 bp downstream
Tssr74137	transcription start site region 74137	1266 bp downstream
Tssr74138	transcription start site region 74138	1296 bp downstream
Tssr74139	transcription start site region 74139	1330 bp downstream
Tssr74140	transcription start site region 74140	1385 bp downstream
Tssr74141	transcription start site region 74141	1785 bp downstream
Tssr74142	transcription start site region 74142	1928 bp downstream