rs259792521 SNP Detail

Summary

• ID
  rs259792521
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:104196999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGATTTG TGTGGGTCAG
  TTGAGTGGGC AGTATTGCCA GCACTTAGGA GAGTGACTTG CAGGCGTACA CTTACCTCTT
  ATAAATTATG GTATTGAAGA TTTTCTTCAG TTCATAGCAG CATGCAGCTA TTGGATTCCT
  TTCCTTTCCT CTCCCTTCTT TTCTTCTCTC TCTCTCTCTT TCTTTCTTTC TTTCTTTCTT
  C
  TTTTTTTTTT TTTTTGTTTG TTTGTTTGTT TTTCAAGACA GGGTTTCTCT GTGTAGCCCT
  GGCTGTCCTG GAACTCACTC TGTAGACCAG GCTGGCCTCG AACTCAGAAA TCTGCCTGCC
  TCTACCTCCC GAGTGCTGGG ATTAAAGACG TGCGCCACCA TGCCCGGCTT TCTTTTCTCT
  CTTTCTTCCC TTCCCTTCCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366114270	MGP_WTSI_5_104478152	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259792521					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366114270	MGP_WTSI_5_104478152	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104196999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16142	CpG island 16142	1581 bp distal
Gm43545	predicted gene 43545	1736 bp upstream
Gm52783	predicted gene, 52783	1357 bp downstream
Mir5619	microRNA 5619	1070 bp downstream
Nudt9	nudix hydrolase 9	Intron
Rr616019	regulatory region 616019	638 bp distal