rs259796886 SNP Detail

Summary

• ID
  rs259796886
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165666922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGAGAG CTGGGGTTAC
  CACGCCCGCC TGGTATGTTC ATTTTAAAGG GCAGTGAATG TGACTGTGGG CTTCTGCATT
  TGTTGCCTCC ATCTGATTGG GGAGTCAGAA AGCTTTGCCA ACCCCAAATC CCTGCAGACC
  CGATGGCAAT CTACTTGCAG CAGATCAAGT AGTATGACCT TCTAGGCCAA ACAGCCAAAT
  K
  GACCGCATGT AACATTTGTC AAGATGGCCC ATGGCCATCT GTCCCCCAGG AAGCTGATCA
  CTCAAAAGGA TTGGTTCCCC CATCCTCATG GTCAGGGCTG CCAGGTGGCA AGATGTCCAA
  GGCTATCAGA GGGGATTAGT TGTATCACTT CTGGCAGTGA CCATTTTGTC GAATGGAATT
  AAAGAAGCAA GAGTAGATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352251236	MGP_WTSI_1_167769484	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259796886					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352251236	MGP_WTSI_1_167769484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165666922 () rs orientation: forward

Symbol	Name	Function Class
Cd247	CD247 antigen	within coordinates
Cpgi956	CpG island 956	1526 bp proximal
Gm71096	predicted gene, 71096	within coordinates
Gm71107	predicted gene, 71107	1706 bp upstream
Rr422481	regulatory region 422481	1120 bp distal
Rr422482	regulatory region 422482	within coordinates
Rr422483	regulatory region 422483	1305 bp proximal
Rr422484	regulatory region 422484	1591 bp proximal
Rr422485	regulatory region 422485	1717 bp proximal
Tssr268	transcription start site region 268	425 bp downstream
Tssr269	transcription start site region 269	533 bp downstream
Tssr9850	transcription start site region 9850	677 bp downstream
Tssr9851	transcription start site region 9851	1703 bp upstream