rs259800072 SNP Detail

Summary

• ID
  rs259800072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58297059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGGAATTA AACTCAGAAC CTCTTGAAGC TCTTAACTGC
  CAAGCTATCT CACCAGCTCT CATTTAGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  R
  TGTGTGCCTG GAATTTGCCA AGCGGGTTAG GCTGCCTGGC TGGCCAGCAA GCCCTAGGGA
  CCCACTTGTC TCTGCCTTCC GAACACCAGG ATTACAAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324352928	CHEV_13_58250606	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259800072					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58297059 () rs orientation: forward

Symbol	Name	Function Class
1700066J03Rik	RIKEN cDNA 1700066J03 gene	270 bp downstream
Cpgi5721	CpG island 5721	473 bp distal
Gm48295	predicted gene, 48295	within coordinates
Rr480978	regulatory region 480978	700 bp distal
Rr480979	regulatory region 480979	within coordinates
Rr480980	regulatory region 480980	117 bp distal
Tssr120063	transcription start site region 120063	721 bp downstream
Tssr120064	transcription start site region 120064	697 bp downstream
Tssr120065	transcription start site region 120065	679 bp downstream