About   Help   FAQ
rs259801480 SNP Detail
Summary
  • ID
    rs259801480
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr7:44127299 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTCCTCAAT CTCCTACCTA
TACTTCATCT CCTCTTTCTC TATCTCCTCC TACTCTTCTA CATCCCTTTA CTTCTCCATC
TCCTCCTCTG TTTTCTTCTC CATCTGCTCT CCCTTTTCTT TCCATCCATA TCATTCCTTA
TCTATCTCTC TTCTCTGCTG TTTCCTCTGC CATCTTTCTC AGTTTTGTTC TTCTACATCT
M
TCCTCCTCCG CTGCCTCCTC CTTTTACTTT GCCTGCTTCC TGCTCCATCT TCTCTTTCTC
CAGCTCCTCT TCCACCTTCT CCTTCTCTCC CATCTCCTTC TCCTCCTCCA TTTCCTCATG
TCTCTTGTTC TTCCACTATC TCCATCCCCT CCTCCTCCAC CCCATTCTCA CCATCTCTTC
CTACTCTTTC CTCTATCTTT                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156093 MGP_WTSI_7_51733245 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259801480 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156093 MGP_WTSI_7_51733245 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127299 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2222 transcription start site region 2222 1521 bp downstream
Tssr2223 transcription start site region 2223 1342 bp downstream
Tssr2224 transcription start site region 2224 496 bp downstream
Tssr2225 transcription start site region 2225 456 bp downstream
Tssr2226 transcription start site region 2226 63 bp upstream
Tssr2227 transcription start site region 2227 1136 bp upstream
Tssr66197 transcription start site region 66197 1943 bp downstream
Tssr66198 transcription start site region 66198 1912 bp downstream
Tssr66199 transcription start site region 66199 1902 bp downstream
Tssr66200 transcription start site region 66200 1879 bp downstream
Tssr66201 transcription start site region 66201 1861 bp downstream
Tssr66202 transcription start site region 66202 1846 bp downstream
Tssr66203 transcription start site region 66203 1824 bp downstream
Tssr66204 transcription start site region 66204 1768 bp downstream
Tssr66205 transcription start site region 66205 1744 bp downstream
Tssr66206 transcription start site region 66206 1731 bp downstream
Tssr66207 transcription start site region 66207 1711 bp downstream
Tssr66208 transcription start site region 66208 1697 bp downstream
Tssr66209 transcription start site region 66209 1666 bp downstream
Tssr66210 transcription start site region 66210 1633 bp downstream
Tssr66211 transcription start site region 66211 1593 bp downstream
Tssr66212 transcription start site region 66212 1550 bp downstream
Tssr66213 transcription start site region 66213 1535 bp downstream
Tssr66214 transcription start site region 66214 1503 bp downstream
Tssr66215 transcription start site region 66215 1473 bp downstream
Tssr66216 transcription start site region 66216 1426 bp downstream
Tssr66217 transcription start site region 66217 1354 bp downstream
Tssr66218 transcription start site region 66218 1300 bp downstream
Tssr66219 transcription start site region 66219 1258 bp downstream
Tssr66220 transcription start site region 66220 1224 bp downstream
Tssr66221 transcription start site region 66221 1205 bp downstream
Tssr66222 transcription start site region 66222 1152 bp downstream
Tssr66223 transcription start site region 66223 1085 bp downstream
Tssr66224 transcription start site region 66224 1062 bp downstream
Tssr66225 transcription start site region 66225 1042 bp downstream
Tssr66226 transcription start site region 66226 1029 bp downstream
Tssr66227 transcription start site region 66227 988 bp downstream
Tssr66228 transcription start site region 66228 985 bp downstream
Tssr66229 transcription start site region 66229 972 bp downstream
Tssr66230 transcription start site region 66230 952 bp downstream
Tssr66231 transcription start site region 66231 917 bp downstream
Tssr66232 transcription start site region 66232 905 bp downstream
Tssr66233 transcription start site region 66233 883 bp downstream
Tssr66234 transcription start site region 66234 853 bp downstream
Tssr66235 transcription start site region 66235 833 bp downstream
Tssr66236 transcription start site region 66236 806 bp downstream
Tssr66237 transcription start site region 66237 785 bp downstream
Tssr66238 transcription start site region 66238 766 bp downstream
Tssr66239 transcription start site region 66239 715 bp downstream
Tssr66240 transcription start site region 66240 634 bp downstream
Tssr66241 transcription start site region 66241 622 bp downstream
Tssr66242 transcription start site region 66242 542 bp downstream
Tssr66243 transcription start site region 66243 528 bp downstream
Tssr66244 transcription start site region 66244 477 bp downstream
Tssr66245 transcription start site region 66245 415 bp downstream
Tssr66246 transcription start site region 66246 387 bp downstream
Tssr66247 transcription start site region 66247 340 bp downstream
Tssr66248 transcription start site region 66248 299 bp downstream
Tssr66249 transcription start site region 66249 276 bp downstream
Tssr66250 transcription start site region 66250 257 bp downstream
Tssr66251 transcription start site region 66251 232 bp downstream
Tssr66252 transcription start site region 66252 201 bp downstream
Tssr66253 transcription start site region 66253 173 bp downstream
Tssr66254 transcription start site region 66254 125 bp downstream
Tssr66255 transcription start site region 66255 98 bp downstream
Tssr66256 transcription start site region 66256 49 bp downstream
Tssr66257 transcription start site region 66257 38 bp downstream
Tssr66258 transcription start site region 66258 within coordinates
Tssr66259 transcription start site region 66259 14 bp upstream
Tssr66260 transcription start site region 66260 130 bp upstream
Tssr66261 transcription start site region 66261 156 bp upstream
Tssr66262 transcription start site region 66262 173 bp upstream
Tssr66263 transcription start site region 66263 179 bp upstream
Tssr66264 transcription start site region 66264 189 bp upstream
Tssr66265 transcription start site region 66265 218 bp upstream
Tssr66266 transcription start site region 66266 261 bp upstream
Tssr66267 transcription start site region 66267 289 bp upstream
Tssr66268 transcription start site region 66268 318 bp upstream
Tssr66269 transcription start site region 66269 338 bp upstream
Tssr66270 transcription start site region 66270 389 bp upstream
Tssr66271 transcription start site region 66271 407 bp upstream
Tssr66272 transcription start site region 66272 473 bp upstream
Tssr66273 transcription start site region 66273 485 bp upstream
Tssr66274 transcription start site region 66274 500 bp upstream
Tssr66275 transcription start site region 66275 508 bp upstream
Tssr66276 transcription start site region 66276 537 bp upstream
Tssr66277 transcription start site region 66277 545 bp upstream
Tssr66278 transcription start site region 66278 577 bp upstream
Tssr66279 transcription start site region 66279 624 bp upstream
Tssr66280 transcription start site region 66280 663 bp upstream
Tssr66281 transcription start site region 66281 694 bp upstream
Tssr66282 transcription start site region 66282 720 bp upstream
Tssr66283 transcription start site region 66283 734 bp upstream
Tssr66284 transcription start site region 66284 751 bp upstream
Tssr66285 transcription start site region 66285 766 bp upstream
Tssr66286 transcription start site region 66286 803 bp upstream
Tssr66287 transcription start site region 66287 821 bp upstream
Tssr66288 transcription start site region 66288 857 bp upstream
Tssr66289 transcription start site region 66289 905 bp upstream
Tssr66290 transcription start site region 66290 966 bp upstream
Tssr66291 transcription start site region 66291 995 bp upstream
Tssr66292 transcription start site region 66292 1033 bp upstream
Tssr66293 transcription start site region 66293 1051 bp upstream
Tssr66294 transcription start site region 66294 1072 bp upstream
Tssr66295 transcription start site region 66295 1357 bp upstream
Tssr66296 transcription start site region 66296 1490 bp upstream
Tssr66297 transcription start site region 66297 1533 bp upstream
Tssr66298 transcription start site region 66298 1558 bp upstream
Tssr66299 transcription start site region 66299 1627 bp upstream
Tssr66300 transcription start site region 66300 1634 bp upstream
Tssr66301 transcription start site region 66301 1658 bp upstream
Tssr66302 transcription start site region 66302 1672 bp upstream
Tssr66303 transcription start site region 66303 1713 bp upstream
Tssr66304 transcription start site region 66304 1721 bp upstream
Tssr66305 transcription start site region 66305 1731 bp upstream
Tssr66306 transcription start site region 66306 1765 bp upstream
Tssr66307 transcription start site region 66307 1822 bp upstream
Tssr66308 transcription start site region 66308 1875 bp upstream
Tssr66309 transcription start site region 66309 1896 bp upstream
Tssr66310 transcription start site region 66310 1934 bp upstream
Tssr72199 transcription start site region 72199 392 bp upstream
Tssr72200 transcription start site region 72200 554 bp downstream
Tssr72201 transcription start site region 72201 1055 bp downstream
Tssr72202 transcription start site region 72202 1918 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory