rs259802806 SNP Detail

Summary

• ID
  rs259802806
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55066685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA TATGAGACTG CGAGGGGCAT
  K
  ATGGGAGTGG GCGGGGCCAG GGCGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319727217	CHEV_1_55084370	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259802806					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55066685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	within coordinates
Gm71172	predicted gene, 71172	within coordinates
Rr371303	regulatory region 371303	within coordinates
Rr411122	regulatory region 411122	1682 bp distal
Rr411123	regulatory region 411123	462 bp distal
Rr411124	regulatory region 411124	56 bp distal
Rr411125	regulatory region 411125	9 bp distal
Rr411126	regulatory region 411126	within coordinates
Rr411127	regulatory region 411127	1316 bp proximal
Sf3b1	splicing factor 3b, subunit 1	45 bp upstream
Tssr6707	transcription start site region 6707	1150 bp downstream
Tssr6708	transcription start site region 6708	71 bp upstream
Tssr11708	transcription start site region 11708	120 bp upstream
Tssr11709	transcription start site region 11709	42 bp upstream