rs259806742 SNP Detail

Summary

• ID
  rs259806742
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTGAAT CACACTTATG
  TGCTCAATGG AACCTTCAAC CTTAACCTCA CCGTGCAAAC TGCAGTGCCC GGGCCATGCC
  CTCCCCCTTC GCCTTCGACT CCGCCTCCAC CTTCAACTCC GCCCTCACCT CCGCCCTCAC
  CTCTGCCCAC ATTATCAACA CCTAGCCCCT CTTTAAGTGA GTATTTCTTG AGCAGTGTGA
  K
  GTTGGTGGCA GCCTTGGTGG TGGTCGACTT TGTGGTGGTC TTCATTAGTT ACTTAGTTAT
  TCAGTGATTT AGTCAATCGC CTTGAGATAC TATGTTGCCC TGCTGGCTTT GAACTTGATT
  TGTAAGCTAG GGTAGCCTCA AACTTGTATT GATTTCTCCG CTGCTGTTAG GTTTGCATTG
  CCCAAATTTA TTCCTTTATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368235229	MGP_WTSI_6_48998125	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259806742					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368235229	MGP_WTSI_6_48998125	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025060 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	1676 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	1688 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56333	transcription start site region 56333	1965 bp downstream
Tssr56334	transcription start site region 56334	1955 bp downstream
Tssr56335	transcription start site region 56335	1935 bp downstream
Tssr56336	transcription start site region 56336	1908 bp downstream
Tssr56337	transcription start site region 56337	1885 bp downstream
Tssr56338	transcription start site region 56338	1869 bp downstream
Tssr56339	transcription start site region 56339	1855 bp downstream
Tssr56340	transcription start site region 56340	1665 bp downstream
Tssr56341	transcription start site region 56341	1405 bp downstream
Tssr56342	transcription start site region 56342	1373 bp downstream
Tssr56343	transcription start site region 56343	827 bp downstream
Tssr56344	transcription start site region 56344	803 bp downstream
Tssr56345	transcription start site region 56345	784 bp downstream
Tssr56346	transcription start site region 56346	731 bp downstream
Tssr56347	transcription start site region 56347	713 bp downstream
Tssr56348	transcription start site region 56348	690 bp downstream
Tssr56349	transcription start site region 56349	369 bp downstream
Tssr56350	transcription start site region 56350	340 bp downstream
Tssr56351	transcription start site region 56351	313 bp downstream
Tssr56352	transcription start site region 56352	294 bp downstream
Tssr56353	transcription start site region 56353	226 bp downstream
Tssr56354	transcription start site region 56354	212 bp downstream
Tssr56355	transcription start site region 56355	188 bp downstream
Tssr56356	transcription start site region 56356	170 bp downstream
Tssr56357	transcription start site region 56357	158 bp downstream
Tssr56358	transcription start site region 56358	140 bp downstream
Tssr56359	transcription start site region 56359	109 bp downstream
Tssr56360	transcription start site region 56360	62 bp downstream
Tssr56361	transcription start site region 56361	1756 bp upstream
Tssr56362	transcription start site region 56362	1984 bp upstream
Tssr60848	transcription start site region 60848	1718 bp upstream
Tssr60849	transcription start site region 60849	764 bp upstream
Tssr60850	transcription start site region 60850	711 bp upstream
Tssr60851	transcription start site region 60851	249 bp upstream
Tssr60852	transcription start site region 60852	220 bp upstream
Tssr60853	transcription start site region 60853	208 bp upstream
Tssr60854	transcription start site region 60854	191 bp upstream
Tssr60855	transcription start site region 60855	146 bp upstream
Tssr60856	transcription start site region 60856	119 bp upstream
Tssr60857	transcription start site region 60857	18 bp upstream