rs259807547 SNP Detail

Summary

• ID
  rs259807547
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112572862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGAAAC TTACCAGGGG
  CAGATCCAGT AAAGACTTTA TAATTTTTCT TTTCTCCACC GTTTTGAGAA CGAGCCTTTG
  GGATCACCGT TGCTTCTCAG AGCAGTAGAA AGGATAGAGA ATAAGTTCTA TATCAGAGAC
  CAGTGAGATG GCTTGAATGG GTAGAGGAGC TTGCCACCAA ATGTGGTGAT CTGAGTTCGA
  W
  TCCCAGAACC CACTGTGTTG GAAGAAAAGA ACCAACTTCT GAAAGTGATC CTCTGACTTC
  CACAGATATG CACTCATACA CGTGCACACA TCTGTACACA CACACACACA CGTGCACACA
  CACACACACA CACACACACA CGTACACACA CACATACACA TAAATGTAAG AAGATGTTTG
  AAAAAAATAT TTCTGGGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390000031	MGP_WTSI_13_113226536	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	A	T	T	T	T	A	T	T	T	A	T	A	T	T	T	T	T	T	A	T	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259807547					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	A	T	T	T	T	A	T	T	T	A	T	A	T	T	T	T	T	T	A	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390000031	MGP_WTSI_13_113226536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112572862 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Rr395952	regulatory region 395952	1869 bp upstream
Rr486369	regulatory region 486369	378 bp distal
Rr486370	regulatory region 486370	1605 bp proximal
Rr486371	regulatory region 486371	1705 bp proximal
Tssr121117	transcription start site region 121117	1820 bp upstream
Tssr121118	transcription start site region 121118	1899 bp upstream
Tssr124051	transcription start site region 124051	1711 bp downstream