rs259814159 SNP Detail

Summary

• ID
  rs259814159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAAATTA TGCTTCCACG
  GGCAGTTTTT AGATATCTCA ATACTTCACA TTCTGTACCG TACCTCACCC TCCCATTATA
  CACCACGGGG GATTTCTTCT CTTTCTCTTG TATGAATTCC CTGAAATCTA GTTGGCTGAG
  GGAAAGTATG GCATACATAT TCAATACATA CACATACACG TTCCAGGGTG TGGGTATTGA
  Y
  CTGTCTGATG GGGTAAAAAT GGCACTAAAG CCATTAACTA GGCTTTATTT TTTAAATTCA
  AGATGGCAGA GACATCTTAA AATAGTCCAA CACAAAAGCA TTCACATCCA GACCAGAGCT
  TCCATTCAGA ACTGGCTACA CTTAGCGCAA CAGCAAGGAC AAAAGAATGG AACCTAGGTG
  CTGAGACGCC AGAGCTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381314836	MGP_WTSI_10_93497684	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259814159					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381314836	MGP_WTSI_10_93497684	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870801 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2121	CpG island 2121			367 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6			1062 bp upstream
Gm49628	predicted gene, 49628			within coordinates
Rr402165	regulatory region 402165			776 bp upstream
Rr437370	regulatory region 437370			within coordinates
Rr437371	regulatory region 437371			756 bp proximal
Rr437372	regulatory region 437372			1022 bp proximal
Rr437373	regulatory region 437373			1073 bp proximal
Tssr3327	transcription start site region 3327			1425 bp upstream
Tssr95293	transcription start site region 95293			510 bp upstream
Tssr95294	transcription start site region 95294			1105 bp upstream
Tssr95295	transcription start site region 95295			1118 bp upstream
Tssr98985	transcription start site region 98985			789 bp downstream
Tssr98986	transcription start site region 98986			832 bp downstream
Tssr98987	transcription start site region 98987			850 bp downstream
Tssr98988	transcription start site region 98988			1784 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein			Intron
				Noncoding-Transcript-Variant